View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4631-Insertion-14 (Length: 475)
Name: NF4631-Insertion-14
Description: NF4631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4631-Insertion-14 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 97 - 475
Target Start/End: Complemental strand, 37008989 - 37008611
Alignment:
| Q |
97 |
ttagttttattatcatcaaatgttttacttcatatattgataggtaattcgagaaaacaaaggtatttctgatgtgatgcctcacataatctacatatct |
196 |
Q |
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| T |
37008989 |
ttagttttattatcatcaaatgttttacttcatatattgataggtaattcgagaaaacaaaggtatttctgatgtgatgcctcacataatctacatatct |
37008890 |
T |
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| Q |
197 |
agagagaagaggccaaaacaaccacatcatcacaaagctggtgcaatgaatgtcttggtaacatttatatttcttcaatcaactccttgaattgttaatc |
296 |
Q |
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| T |
37008889 |
agagagaagaggccaaaacaaccacatcatcacaaagctggtgcaatgaatgtcttggtaacatttatatttcttcaatcaactccttgaattgttaatc |
37008790 |
T |
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| Q |
297 |
tttcattacaacattgtaataaggcaatgtgtttccttaatttcgattcaaaagttctcataatgtgtattgtatacagacaagagtctctggattgatg |
396 |
Q |
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| T |
37008789 |
tttcattacaacattgtaataaggcaatgtgtttccttaatttcgattcaaaagttctcataatgtgtattgtatacagacaagagtctctggattgatg |
37008690 |
T |
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| Q |
397 |
acaagtgctccctttatgctaaacttagattgtgacatgtatgtaaacaattctaagattgtactacatgccctttgca |
475 |
Q |
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| T |
37008689 |
acaaatgctccctttatgctaaacttagattgtgacatgtatgtgaacaattctaagattgtactacatgccctttgca |
37008611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 37009823 - 37009734
Alignment:
| Q |
7 |
ataattatattttatcatttagatgtgtcacaatattttatcaaagnnnnnnnctatctgctacacgatatataaatgatgagtccttaa |
96 |
Q |
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| T |
37009823 |
ataattatattttatcatttagatgtgtcacaatattttatcaaagaaaaaaactatctgctacacgatatataaatgatgagtccttaa |
37009734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 457
Target Start/End: Complemental strand, 37025896 - 37025811
Alignment:
| Q |
372 |
acagacaagagtctctggattgatgacaagtgctccctttatgctaaacttagattgtgacatgtatgtaaacaattctaagattg |
457 |
Q |
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| T |
37025896 |
acagacaagagtctctggaatgatgacaaatgctcctttcatattgaacttagattgtgacatgcacgtgaacaatcctaagattg |
37025811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 37035801 - 37035762
Alignment:
| Q |
174 |
tgcctcacataatctacatatctagagagaagaggccaaa |
213 |
Q |
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| T |
37035801 |
tgcctcacttaatctacatatctagagagaagaggccaaa |
37035762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 456
Target Start/End: Complemental strand, 37044892 - 37044809
Alignment:
| Q |
373 |
cagacaagagtctctggattgatgacaagtgctccctttatgctaaacttagattgtgacatgtatgtaaacaattctaagatt |
456 |
Q |
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| T |
37044892 |
cagacaagagtctctggattgatgaccaatgctccttttatgttgaacgtagactgtgacatggttgtgaacaatcccaagatt |
37044809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 37026267 - 37026237
Alignment:
| Q |
174 |
tgcctcacataatctacatatctagagagaa |
204 |
Q |
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| T |
37026267 |
tgcctcacataatctacatatctagagagaa |
37026237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 17657492 - 17657564
Alignment:
| Q |
185 |
atctacatatctagagagaagaggccaaaacaaccacatcatcacaaagctggtgcaatgaatgtcttggtaa |
257 |
Q |
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| T |
17657492 |
atctacatatctagagagaagaggccaaagcaaccacatcatttcaaagccggtgccatgaatgtgttggtaa |
17657564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 447
Target Start/End: Original strand, 17657647 - 17657721
Alignment:
| Q |
373 |
cagacaagagtctctggattgatgacaagtgctccctttatgctaaacttagattgtgacatgtatgtaaacaat |
447 |
Q |
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| T |
17657647 |
cagacaagagtctctgggttgattaccaatgcacccttcatgttgaacgtggattgtgacatgtttgtaaacaat |
17657721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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