View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4631-Insertion-22 (Length: 160)
Name: NF4631-Insertion-22
Description: NF4631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4631-Insertion-22 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 60; Significance: 7e-26; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 30425600 - 30425541
Alignment:
| Q |
101 |
tgcaatcattctaatagtggaataagcaaattataaattttacaattccactttacgtag |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30425600 |
tgcaatcattctaatagtggaataagcaaattataaattttacaattccactttacgtag |
30425541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 30431627 - 30431574
Alignment:
| Q |
107 |
cattctaatagtggaataagcaaattataaattttacaattccactttacgtag |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30431627 |
cattctaatagtggaataagcaaattataaattttacaattccactttacgtag |
30431574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 30437874 - 30437829
Alignment:
| Q |
115 |
tagtggaataagcaaattataaattttacaattccactttacgtag |
160 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30437874 |
tagtggaataggcaaattataaattttacaattccactttacgtag |
30437829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 30469693 - 30469640
Alignment:
| Q |
107 |
cattctaatagtggaataagcaaattataaattttacaattccactttacgtag |
160 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||||||||||||| |||| |||| |
|
|
| T |
30469693 |
cattctaataaggaaataagaaaattataaattttacaattccagtttatgtag |
30469640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University