View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4631-Insertion-4 (Length: 826)

Name: NF4631-Insertion-4
Description: NF4631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4631-Insertion-4
NF4631-Insertion-4
[»] chr2 (15 HSPs)
chr2 (123-826)||(32183746-32184448)
chr2 (123-389)||(32175881-32176163)
chr2 (258-411)||(32159590-32159744)
chr2 (8-84)||(32184487-32184563)
chr2 (742-826)||(32178875-32178959)
chr2 (250-363)||(32179063-32179174)
chr2 (742-815)||(32175748-32175821)
chr2 (752-826)||(32159460-32159534)
chr2 (589-701)||(4880582-4880690)
chr2 (544-590)||(21659131-21659177)
chr2 (40-82)||(32176202-32176244)
chr2 (586-653)||(20262616-20262682)
chr2 (123-194)||(2818905-2818977)
chr2 (249-294)||(32159745-32159790)
chr2 (150-194)||(32159926-32159971)
[»] chr4 (4 HSPs)
chr4 (588-701)||(51702290-51702405)
chr4 (608-701)||(8069743-8069837)
chr4 (588-676)||(26070895-26070981)
chr4 (588-701)||(42912555-42912664)
[»] chr8 (2 HSPs)
chr8 (604-697)||(2199653-2199747)
chr8 (588-718)||(26130272-26130401)
[»] chr7 (2 HSPs)
chr7 (590-701)||(26285876-26285986)
chr7 (553-591)||(32864408-32864446)
[»] chr5 (2 HSPs)
chr5 (491-590)||(12658554-12658654)
chr5 (544-590)||(35247748-35247794)
[»] chr3 (1 HSPs)
chr3 (604-689)||(51925708-51925793)
[»] chr1 (3 HSPs)
chr1 (588-688)||(24886774-24886873)
chr1 (612-701)||(27292133-27292223)
chr1 (540-582)||(32839149-32839191)


Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 123 - 826
Target Start/End: Complemental strand, 32184448 - 32183746
Alignment:
Q  123 tggataccttgaattaagtgtgaaattattaactagaaaaaatacacactttgatctttcaattgatttggataccttgaaccaaataaaaattgatatg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32184448 tggataccttgaattaagtgtgaaattattaactagaaaaaatacacactttgatctttcaattaatttggataccttgaaccaaataaaaattgatatg 32184349  T
Q  223 atcatgtataagcg---atcttaattcaattttttggcaaaaatcttaatttaatggtacttctttatttcttttggcaagcagggaaataaaatctgaa 319  Q
    ||||| ||||| ||   ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32184348 atcatatataatcgcagatcttaattcagttttttggcaaaaatcttaatttaatggtacttctttatttcttttggcaagcagggaaataaaatctgaa 32184249  T
Q  320 atcatttatcaaaacagtttcaaaaagtctgaaattcttaatttactgtttgcaatgcacctcattcatgtatagtttcactatacttaggtgtacagtc 419  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |            ||||||||||    
T  32184248 atcatttatgaaaactgtttcaaaaagtctgaaattcttaatttactg-ttgcaatgcacctcattcatgtatagtgt------------gtgtacagtc 32184162  T
Q  420 caattgaaagaaaattatactttccaggattcaactaaattatactctacggagttcctggaccttggatc------gtgttggcagatgattcatatgc 513  Q
    |||  ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||      |||||| ||||||||||||||||    
T  32184161 caaaggaaagaaaattatactttccaggattcaagtaaattatactttacggagttgctggaccttggatcgtttctgtgttgacagatgattcatatgc 32184062  T
Q  514 ctacttgatactctgaacacccactttgtgttttttgcgattcggtttcgcatccatacgtgggtgcgctgaattgttgtttagagttgctttttattta 613  Q
    |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32184061 ctacttgatactctgaacactcactctgcgttttttgcgattcggtttcgcatccatacgtgggtgcgctgaattgttgtttagagttgctttttattt- 32183963  T
Q  614 ccacttgtgtactgatttgatgtatca-ccgttagggtttgagcttgtggttttatgggtcaggttcatgtcccccagtcttgtacttcttattttattt 712  Q
     ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32183962 -cacttgtgtaccgatttgatgtatcacccgttagggtttcagcttgtggttttatgggtcaggttcatgtcccccattcttgtacttcttattttattt 32183864  T
Q  713 gaatttttctttagtttt----nnnnnnnnncttcattgcagccaataatttttgcagaatatatcagtcagctgatctagaaattcaaacgtctgatct 808  Q
    |||||||||||||| |||             |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32183863 gaatttttctttagctttaaaaaaaaaaaaacttcattgcagccaataacttttgcagaatatatcagtcagctgatctagaaattcaaacgtctgatct 32183764  T
Q  809 tcatcaatgatcgagatc 826  Q
    ||||||||||||||||||    
T  32183763 tcatcaatgatcgagatc 32183746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 123 - 389
Target Start/End: Complemental strand, 32176163 - 32175881
Alignment:
Q  123 tggataccttgaattaagtgtgaaattattaactagaaaaaatacacactttgatctttcaattgatttggataccttgaaccaaataaaaattgatatg 222  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  32176163 tggataccttgaactaagtgtgaaattattaactagaagaaatacacactttgatctttcaattgatttggataccttgagccaaataaaaatttatatg 32176064  T
Q  223 atc--atgtataagc---gatcttaattca--------attttttggcaaaaatcttaatttaatggta----cttctttatttcttttggcaagcaggg 305  Q
    |||  || ||||| |   |||| |||||||         ||||||| ||||||||||||||||||||||     || ||||||||||||| | |||| ||    
T  32176063 atcatatatataatcgtagatcgtaattcatttttatttttttttgtcaaaaatcttaatttaatggtatttttttttttatttcttttgactagcaagg 32175964  T
Q  306 aaataaaatctgaaatcatttatcaaaacagtttcaaaaagtctgaaattcttaatttactgtttgcaatgcacctcattcatg 389  Q
    ||||||||||||||||||||||  |||| ||||||  ||| ||||||||||| |||||| ||||||||| | ||||||||||||    
T  32175963 aaataaaatctgaaatcatttaagaaaa-agtttcttaaaatctgaaattctcaatttaatgtttgcaaagtacctcattcatg 32175881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 258 - 411
Target Start/End: Complemental strand, 32159744 - 32159590
Alignment:
Q  258 aaaaatcttaatttaatggtacttctttatttcttttggcaagcagggaaataaaatctgaaatcatttatcaaaacagtttcaaaaagtctgaaattct 357  Q
    |||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||    
T  32159744 aaaaatcttaatttaatgatatttctttatttcttttgacaagcagggaaataaaatctgaaatcatttatgaaaaaagtttcataaaatctgaaattct 32159645  T
Q  358 taatttactgtttgcaatgcacctcattcatgtatagttt-cactatacttaggt 411  Q
    ||||||| |||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  32159644 taatttagtgtttgaaatgcacctcattcatgtatagtttccactatatttaggt 32159590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 32184563 - 32184487
Alignment:
Q  8 gtttcttgctttttaattactttttggttaagttacttttagattgaggaaattttatgaccttgagtttactataa 84  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32184563 gtttcttgctttttaattacttttaggttaagttacttttagattgaggaaattttatgaccttgagtttactataa 32184487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 742 - 826
Target Start/End: Complemental strand, 32178959 - 32178875
Alignment:
Q  742 tcattgcagccaataatttttgcagaatatatcagtcagctgatctagaaattcaaacgtctgatcttcatcaatgatcgagatc 826  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  32178959 tcatttcagccaataatttttgcagaccatatcagtcagctgatctagaatttcaaccgtctgatcttcatcaacgatcgagatc 32178875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 250 - 363
Target Start/End: Complemental strand, 32179174 - 32179063
Alignment:
Q  250 tttttggcaaaaatcttaatttaatggtacttctttatttcttttggcaagcagggaaataaaatctgaaatcatttatcaaaacagtttcaaaaagtct 349  Q
    |||||| ||||||||||||||||||| |  ||||||||||||||||  ||||| ||||||||||||| ||||||||||| |||| || |||| ||| |||    
T  32179174 tttttgacaaaaatcttaatttaatgtt--ttctttatttcttttgaaaagcatggaaataaaatctaaaatcatttataaaaaaagattcataaaatct 32179077  T
Q  350 gaaattcttaattt 363  Q
    ||||||||| ||||    
T  32179076 gaaattctttattt 32179063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 742 - 815
Target Start/End: Complemental strand, 32175821 - 32175748
Alignment:
Q  742 tcattgcagccaataatttttgcagaatatatcagtcagctgatctagaaattcaaacgtctgatcttcatcaa 815  Q
    |||||| |||||||||||||| ||||  |||||||||||||||||||||| ||||||| |||||||||||||||    
T  32175821 tcattgtagccaataattttttcagaccatatcagtcagctgatctagaatttcaaacatctgatcttcatcaa 32175748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 752 - 826
Target Start/End: Complemental strand, 32159534 - 32159460
Alignment:
Q  752 caataatttttgcagaatatatcagtcagctgatctagaaattcaaacgtctgatcttcatcaatgatcgagatc 826  Q
    |||||||||||||||| ||||||||||||||||||||||| | ||| ||||||  ||||||||| ||||||||||    
T  32159534 caataatttttgcagactatatcagtcagctgatctagaattccaaccgtctgtccttcatcaacgatcgagatc 32159460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 589 - 701
Target Start/End: Original strand, 4880582 - 4880690
Alignment:
Q  589 gttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatcacc-gttagggtttgagcttgtggttttatgggtcaggttcatgtcccc 687  Q
    |||||||| |||||  |||| ||||||||||||  ||| | ||| ||||||||| |||| |||||||| ||||||||||| | |||||||||||| ||||    
T  4880582 gttgtttaaagttg--ttttctttaccacttgt--actaacttgttgtatcacccgttaaggtttgaggttgtggttttacgagtcaggttcatg-cccc 4880676  T
Q  688 cagtcttgtacttc 701  Q
    || |||||||||||    
T  4880677 caatcttgtacttc 4880690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 544 - 590
Target Start/End: Original strand, 21659131 - 21659177
Alignment:
Q  544 ttttttgcgattcggtttcgcatccatacgtgggtgcgctgaattgt 590  Q
    |||||||| ||||| |||||||||||||||||||||||||| |||||    
T  21659131 ttttttgcaattcgatttcgcatccatacgtgggtgcgctggattgt 21659177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 32176244 - 32176202
Alignment:
Q  40 ttacttttagattgaggaaattttatgaccttgagtttactat 82  Q
    ||||||||||||| ||||||||||||||||||||||| |||||    
T  32176244 ttacttttagatttaggaaattttatgaccttgagttgactat 32176202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 653
Target Start/End: Complemental strand, 20262682 - 20262616
Alignment:
Q  586 attgttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatcac-cgttagggtttg 653  Q
    |||||||||||||||||  |||| |||||||||||| | |||||||| |||||||| ||||||||||||    
T  20262682 attgttgtttagagttg--ttttctttaccacttgtattctgatttgttgtatcactcgttagggtttg 20262616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 2818905 - 2818977
Alignment:
Q  123 tggataccttgaattaagtgtgaaattattaactagaaaaaatacac-actttgatctttcaattgatttgga 194  Q
    |||||| |||||| ||||  | ||||| |||||||||| |||||||| |||||||||||||| ||||||||||    
T  2818905 tggatatcttgaactaagcataaaattgttaactagaagaaatacactactttgatctttcatttgatttgga 2818977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 32159790 - 32159745
Alignment:
Q  249 ttttttggcaaaaatcttaatttaatggtacttctttatttctttt 294  Q
    |||||||  |||||||||||||||||| || |||||||||||||||    
T  32159790 ttttttgataaaaatcttaatttaatgatatttctttatttctttt 32159745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 32159971 - 32159926
Alignment:
Q  150 attaactagaaaaaatacac-actttgatctttcaattgatttgga 194  Q
    ||||||||||  |||||||| |||||||||||||||||||||||||    
T  32159971 attaactagatgaaatacacgactttgatctttcaattgatttgga 32159926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 6e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 588 - 701
Target Start/End: Original strand, 51702290 - 51702405
Alignment:
Q  588 tgttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatcac-cgtta-gggtttgagcttgtggttttatgggtcaggttcatgtcc 685  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| || ||||| ||    
T  51702290 tgttgtttagagttgttttctattcaccacttgtgtactgatttgatgtatcactcgttaggggtttgagcttgtggttttctgggtctggctcatgccc 51702389  T
Q  686 cccagtcttgtacttc 701  Q
    ||||| ||||||||||    
T  51702390 cccagccttgtacttc 51702405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 608 - 701
Target Start/End: Original strand, 8069743 - 8069837
Alignment:
Q  608 tatttaccacttgtgtactgatttgatgtatcacc-gttagggtttgagcttgtggttttatgggtcaggttcatgtcccccagtcttgtacttc 701  Q
    ||||||||||| ||||||  ||||| ||||||||| ||||||||||||| | |||||| |  |||||||||||||| ||||||||||||||||||    
T  8069743 tatttaccactagtgtacatatttgttgtatcacccgttagggtttgagttggtggttatccgggtcaggttcatgccccccagtcttgtacttc 8069837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 588 - 676
Target Start/End: Original strand, 26070895 - 26070981
Alignment:
Q  588 tgttgtttagagttgctttttatttaccacttgtgtactgatttgatgtat-caccgttagggtttgagcttgtggttttatgggtcagg 676  Q
    |||||||||||||||  |||| ||||||||||||||||||||||| ||||| | |||||||||||||||  ||||| |||||||||||||    
T  26070895 tgttgtttagagttg--ttttctttaccacttgtgtactgatttgttgtatcccccgttagggtttgagtctgtgg-tttatgggtcagg 26070981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 588 - 701
Target Start/End: Original strand, 42912555 - 42912664
Alignment:
Q  588 tgttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatcacc-gttagggtttgagcttgtggttttatgggtcaggttcatgtccc 686  Q
    |||||||||||||||  |||| ||||||||||||  ||| ||||| ||||| ||| ||||||||||||| ||||||||||| ||| |||||||||| |||    
T  42912555 tgttgtttagagttg--ttttctttaccacttgt--actaatttgttgtataacccgttagggtttgaggttgtggttttacgggccaggttcatg-ccc 42912649  T
Q  687 ccagtcttgtacttc 701  Q
    | | |||||||||||    
T  42912650 ctaatcttgtacttc 42912664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 604 - 697
Target Start/End: Complemental strand, 2199747 - 2199653
Alignment:
Q  604 tttttatttaccacttgtgtactgatttgatgtatcacc-gttagggtttgagcttgtggttttatgggtcaggttcatgtcccccagtcttgta 697  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||    
T  2199747 tttttatataccacttgtgtactgatttgctgtatcacccgttagggtttgagtttgtggttttctgggtcaggttcatgccccccagtcttgta 2199653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 588 - 718
Target Start/End: Original strand, 26130272 - 26130401
Alignment:
Q  588 tgttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatcacc-gttagggtttgagcttgtggttttatgggtcaggttcatgtccc 686  Q
    ||||||||||||||| |||| ||||||||||| |||||||| |||  ||| |||| ||| |||||||||  | ||||| | |||||||| ||||||||||    
T  26130272 tgttgtttagagttg-ttttcatttaccacttttgtactgaattgtcgtaccacccgtttgggtttgagtctatggttatctgggtcagattcatgtccc 26130370  T
Q  687 ccagtcttgtacttcttattttatttgaattt 718  Q
    ||||||||||||||| | |||||||| |||||    
T  26130371 ccagtcttgtacttcct-ttttattttaattt 26130401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 590 - 701
Target Start/End: Complemental strand, 26285986 - 26285876
Alignment:
Q  590 ttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatcacc-gttagggtttgagcttgtggttttatgggtcaggttcatgtccccc 688  Q
    |||||||||||||  |||| || |||||||||||| ||||||| ||||||||  |||||||||||||  ||||||| | | ||||||||||||| ||||     
T  26285986 ttgtttagagttg--ttttcttaaccacttgtgtaatgatttgttgtatcacatgttagggtttgagtctgtggttctctaggtcaggttcatgccccct 26285889  T
Q  689 agtcttgtacttc 701  Q
    | |||||||||||    
T  26285888 aatcttgtacttc 26285876  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 553 - 591
Target Start/End: Complemental strand, 32864446 - 32864408
Alignment:
Q  553 attcggtttcgcatccatacgtgggtgcgctgaattgtt 591  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  32864446 attcggtttcgcgtccatacgtgggtgcgctggattgtt 32864408  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 491 - 590
Target Start/End: Original strand, 12658554 - 12658654
Alignment:
Q  491 gtgttggcagatgattcatatgcctacttga-tactctgaacacccactttgtgttttttgcgattcggtttcgcatccatacgtgggtgcgctgaattg 589  Q
    ||||||||||||||| |||| | |||||| | |||| |||||| ||||| ||  |||||||| |||||||||||||||||||||||| || |||| ||||    
T  12658554 gtgttggcagatgatccatacgtctactttaatactatgaacaaccactctgcattttttgcaattcggtttcgcatccatacgtggttgtgctggattg 12658653  T
Q  590 t 590  Q
    |    
T  12658654 t 12658654  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 590
Target Start/End: Original strand, 35247748 - 35247794
Alignment:
Q  544 ttttttgcgattcggtttcgcatccatacgtgggtgcgctgaattgt 590  Q
    |||||||| ||| |||||||| ||||||||||||||||||| |||||    
T  35247748 ttttttgcaatttggtttcgcgtccatacgtgggtgcgctggattgt 35247794  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 604 - 689
Target Start/End: Complemental strand, 51925793 - 51925708
Alignment:
Q  604 tttttatttaccacttgtgtactgatttgatgtatca-ccgttagggtttgagcttgtggttttatgggtcaggttcatgtccccca 689  Q
    ||||||||||||||   |||||||||||| ||||||| | |||||||||||||  ||||||| | ||||||||||||||| ||||||    
T  51925793 tttttatttaccacacttgtactgatttgttgtatcatctgttagggtttgagtctgtggttat-tgggtcaggttcatgcccccca 51925708  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 588 - 688
Target Start/End: Original strand, 24886774 - 24886873
Alignment:
Q  588 tgttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatca-ccgttagggtttgagcttgtggttttatgggtcaggttcatgtccc 686  Q
    |||||||||||||||  |||| |||||| ||||||| |||||||| ||||||| |||||||||||||     |||||| | ||||||||||||||| |||    
T  24886774 tgttgtttagagttg--ttttctttaccgcttgtgttctgatttgttgtatcatccgttagggtttgtatcggtggttatctgggtcaggttcatgcccc 24886871  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 701
Target Start/End: Complemental strand, 27292223 - 27292133
Alignment:
Q  612 taccacttgtgtactgatttgatgtatcaccgttagggtttgagcttgtggttttatgggtcaggttcatgtcccc-cagtcttgtacttc 701  Q
    |||||||| ||| |||||||| |||||| |||||| || |||   |||||||||  ||||||||||| ||| |||| ||||||||||||||    
T  27292223 taccacttatgtgctgatttgttgtatccccgttacgggttgtttttgtggtttactgggtcaggtttatgccccctcagtcttgtacttc 27292133  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 540 - 582
Target Start/End: Complemental strand, 32839191 - 32839149
Alignment:
Q  540 tgtgttttttgcgattcggtttcgcatccatacgtgggtgcgc 582  Q
    |||||||||||| |||||||||||||||||  |||||||||||    
T  32839191 tgtgttttttgcaattcggtttcgcatccacgcgtgggtgcgc 32839149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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