View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4631-Insertion-5 (Length: 822)

Name: NF4631-Insertion-5
Description: NF4631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4631-Insertion-5
NF4631-Insertion-5
[»] chr6 (10 HSPs)
chr6 (168-695)||(28938977-28939498)
chr6 (168-620)||(20699199-20699651)
chr6 (8-153)||(28938749-28938894)
chr6 (761-822)||(28939564-28939625)
chr6 (67-173)||(20699031-20699137)
chr6 (210-283)||(14815027-14815100)
chr6 (186-295)||(6342397-6342506)
chr6 (646-695)||(20699672-20699721)
chr6 (243-327)||(34309837-34309921)
chr6 (240-289)||(28519719-28519768)
[»] chr5 (7 HSPs)
chr5 (210-526)||(15448683-15448998)
chr5 (185-307)||(20324013-20324135)
chr5 (416-503)||(16991045-16991132)
chr5 (210-281)||(17386875-17386946)
chr5 (191-294)||(26466773-26466876)
chr5 (240-283)||(26472136-26472179)
chr5 (543-612)||(11924162-11924231)
[»] scaffold0329 (2 HSPs)
scaffold0329 (189-318)||(11197-11326)
scaffold0329 (416-611)||(10902-11098)
[»] chr4 (12 HSPs)
chr4 (189-318)||(22176905-22177034)
chr4 (191-316)||(35087394-35087519)
chr4 (210-283)||(5239569-5239642)
chr4 (210-283)||(10652966-10653039)
chr4 (210-283)||(10867111-10867184)
chr4 (195-305)||(22643554-22643664)
chr4 (416-611)||(22177133-22177329)
chr4 (415-503)||(23167638-23167726)
chr4 (186-268)||(19034758-19034840)
chr4 (560-614)||(22643243-22643297)
chr4 (419-611)||(10652636-10652829)
chr4 (419-611)||(10866781-10866974)
[»] chr1 (7 HSPs)
chr1 (189-318)||(52777868-52777997)
chr1 (210-283)||(2359786-2359859)
chr1 (416-611)||(52777573-52777769)
chr1 (402-480)||(30756154-30756232)
chr1 (402-480)||(30763606-30763684)
chr1 (407-611)||(14455423-14455628)
chr1 (217-294)||(17883723-17883800)
[»] chr3 (12 HSPs)
chr3 (189-318)||(12285488-12285617)
chr3 (189-304)||(19586674-19586789)
chr3 (416-614)||(19586902-19587101)
chr3 (243-304)||(7420054-7420115)
chr3 (240-292)||(17479408-17479460)
chr3 (240-283)||(8836233-8836276)
chr3 (185-280)||(13889995-13890090)
chr3 (240-283)||(55310168-55310211)
chr3 (416-477)||(7419880-7419941)
chr3 (416-477)||(12285328-12285389)
chr3 (217-294)||(38823524-38823601)
chr3 (401-526)||(44667728-44667853)
[»] chr8 (4 HSPs)
chr8 (168-614)||(44229381-44229830)
chr8 (217-313)||(15757383-15757479)
chr8 (240-292)||(21029638-21029690)
chr8 (243-316)||(19991238-19991311)
[»] chr2 (3 HSPs)
chr2 (347-516)||(34890996-34891165)
chr2 (210-317)||(27036151-27036258)
chr2 (186-295)||(28017426-28017535)
[»] scaffold1049 (1 HSPs)
scaffold1049 (243-327)||(2393-2477)
[»] chr7 (3 HSPs)
chr7 (240-292)||(18481665-18481717)
chr7 (210-292)||(38847292-38847374)
chr7 (224-316)||(20056416-20056509)
[»] scaffold0022 (1 HSPs)
scaffold0022 (186-233)||(169996-170043)
[»] scaffold1416 (1 HSPs)
scaffold1416 (186-295)||(1225-1334)


Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 168 - 695
Target Start/End: Original strand, 28938977 - 28939498
Alignment:
Q  168 atatgaccaaaa-gatgaaggaagtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctgg 266  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28938977 atatgaccaaaaagatgaaggaagtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctgg 28939076  T
Q  267 ggagtttctacacaagacctttgatgaat----cataccatgagattcataaaatgaaggaatgagaaattcggacccatgtctgatctgacatacttag 362  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  28939077 ggagtttctacacaagacctttgatgaataatatataccatgagattcataaaatgaaggaatgataaattcaaacccatgtctgatctgacatacttag 28939176  T
Q  363 gggaaacatgaaactgattttggatcattttgataaaggattgaacatgatgggaaacttcagctttggatttaagtaagatgatccatagaaacctact 462  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28939177 gggtaacatgaaactgattttggatcattttgataaaggattgaacatgatgggaaacttcagctttggatttaagtaagatgatccatagaaacctact 28939276  T
Q  463 atgatcatcgacaatggtt-aaaaaatattaatggccatgaatggatgtaacagataatggacccaaatgttaaaatgtaaaagctcaaaatttgaaaaa 561  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  28939277 atgatcatcgataatggttaaaaaaatattaatggccataaatggatgtaacaaataattgacccaaatgtcaaaatgtaaaagctcaaaatttgaaaaa 28939376  T
Q  562 gcatgtgaaatactagattgaaaaggtaaatgtttctgcttagcaaaatgacatatatcccaaagagaagagttattatctaatgacatcttactcattc 661  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || | |||||| ||||||| | |||||||               
T  28939377 gcatgtgaaatactagattgaaaaggtaaatgtttccacttagcaaaatgacatatatctcacaaagaagaattattatatgatgacat----------- 28939465  T
Q  662 cctggtgagataaatgtcctagtctaaaatgcca 695  Q
     |||||||||||||||||||||||||||||||||    
T  28939466 -ctggtgagataaatgtcctagtctaaaatgcca 28939498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 168 - 620
Target Start/End: Original strand, 20699199 - 20699651
Alignment:
Q  168 atatgaccaaaagatgaaggaagtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggg 267  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| || |||||| ||||    
T  20699199 atatgaccaaaagatgaaggaagtttggattgaaataaaagggctcttccaacattcaaaatatgttggtgttttctttctactcaacaattttgttggg 20699298  T
Q  268 gagtttctacacaagacctttgatgaatcataccatgagattcataaaatgaaggaatgagaaattc-ggacccatgtctgatctgacatacttagggga 366  Q
    ||||||||||||||||| |||| ||||| |||||||||||||||||||| | ||||||||||||||| || ||  |||||||||||||||||||||| |     
T  20699299 gagtttctacacaagacttttggtgaataataccatgagattcataaaaagtaggaatgagaaattcaggtccattgtctgatctgacatacttaggagt 20699398  T
Q  367 aacatgaaactgattttggatcattttgataaaggattgaacatgatgggaaacttcagctttggatttaagtaagatgatccatagaaacctactatga 466  Q
    ||||| ||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20699399 aacataaaactgattttggctcattttgataaaagattgaacatgat-ggaaacttcagctttggatttcagtaagatgatccatagaaacctactatga 20699497  T
Q  467 tcatcgacaatggttaaaaaatattaatggccatgaatggatgtaacagataatggac-ccaaatgttaaaatgtaaaagctcaaaatttgaaaaagcat 565  Q
    ||||| |||||||||||||| |||| ||| | |||||||||||||||||||||||||| | | |||| || ||||||||||| |||||||||| ||||||    
T  20699498 tcatctacaatggttaaaaagtatttatgactatgaatggatgtaacagataatggactctatatgtcaagatgtaaaagcttaaaatttgaagaagcat 20699597  T
Q  566 gtgaaatactagattgaaaaggtaaatgtttctgcttagcaaaatgacatatatc 620  Q
    |||||||||||||||||||||||| ||||||||  ||| || |||||||||||||    
T  20699598 gtgaaatactagattgaaaaggtagatgtttctattta-cacaatgacatatatc 20699651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 28938749 - 28938894
Alignment:
Q  8 attgtaacctactaacctttatagcatgacttcctatcccaagaaaacagnnnnnnnggctctagtttgaaatttaattctatgagactatagagaagaa 107  Q
    ||||||||||||||||||||||||| |||  |  |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  28938749 attgtaacctactaacctttatagcctgaaattatatcccaagaaaacaatttttttggctctagtttgaaatttaattctatgagactatagagaagaa 28938848  T
Q  108 gcatatcacatacaaccaaacactttgtaagtagagatgtcaggtg 153  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  28938849 gcatatcacatacaaccaaacactttgaaagtagagatatcaggtg 28938894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 761 - 822
Target Start/End: Original strand, 28939564 - 28939625
Alignment:
Q  761 gcgaagattcaatgaacaagatgaagattcaacgagatcttcatctgagaagcacagcggaa 822  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  28939564 gcgaagaatcaatgaacaagacgaagattcaacgagatcttcatctgagaagcacaacggaa 28939625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 20699031 - 20699137
Alignment:
Q  67 ctctagtttgaaatttaattctatgagactatagagaagaagcatatcacatacaaccaaacactttgtaagtagagatgtcaggtgattgatggtaaag 166  Q
    |||||||||||| |||| || |||||||||||||||||||||||||  ||| ||||| |||||||||  ||||||| || |||||| ||| ||  |||||    
T  20699031 ctctagtttgaagtttagttttatgagactatagagaagaagcatagtacaaacaactaaacactttaaaagtagaaatatcaggtaatttattataaag 20699130  T
Q  167 tatatga 173  Q
    |||||||    
T  20699131 tatatga 20699137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 14815100 - 14815027
Alignment:
Q  210 gctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaaga 283  Q
    ||||| |||||||| ||||| ||| | | ||||||||| |||||||||||||| ||||||||||||||||||||    
T  14815100 gctctaccaacatttaaaatgtgttgatgttttctttcaactctaccattttgttggggagtttctacacaaga 14815027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 6342506 - 6342397
Alignment:
Q  186 ggaagtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagacc 285  Q
    ||||||||||||||||| ||    |||||  ||||||| | ||| ||||||| |||||| ||||||||| ||||||| |  || |||||||||||||  |    
T  6342506 ggaagtttggattgaaacaacaaagctctagcaacattgagaatgtgtcggtgttttctctctactctagcattttgttcaggtgtttctacacaagctc 6342407  T
Q  286 tttgatgaat 295  Q
    ||||||||||    
T  6342406 tttgatgaat 6342397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 695
Target Start/End: Original strand, 20699672 - 20699721
Alignment:
Q  646 gacatcttactcattccctggtgagataaatgtcctagtctaaaatgcca 695  Q
    |||||||||||||||| ||| |||| ||| ||||||||||||||||||||    
T  20699672 gacatcttactcattctctgatgagctaagtgtcctagtctaaaatgcca 20699721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 34309921 - 34309837
Alignment:
Q  243 ctttctactctaccattttgctggggagtttctacacaagacctttgatgaatcataccatgagattcataaaatgaaggaatga 327  Q
    ||||||||  |||||||||| || ||||| || |||||||||||||||||||| ||||| | |||   |||||||||||| ||||    
T  34309921 ctttctacaataccattttgttgaggagtctcaacacaagacctttgatgaatgatacctttagaaagataaaatgaaggcatga 34309837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 28519719 - 28519768
Alignment:
Q  240 tttctttctactctaccattttgctggggagtttctacacaagacctttg 289  Q
    |||||||| ||||| |||||||| ||||| ||||| ||||||||||||||    
T  28519719 tttctttccactctcccattttgttggggggtttcaacacaagacctttg 28519768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 210 - 526
Target Start/End: Complemental strand, 15448998 - 15448683
Alignment:
Q  210 gctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagacctttgatgaatcataccatgagatt 309  Q
    ||||| |||||||| |  |||||| | ||| ||||||| ||| || ||||||| ||||||||||| |||||| |  ||| ||| || ||||||||||||     
T  15448998 gctctgccaacattaaggatatgttgatatcttctttcaactgtagcattttgttggggagtttcaacacaatattttttatgtattataccatgagata 15448899  T
Q  310 cataaaat--gaaggaatgagaaattcggacccatgtctgatctgacatacttaggggaaacatgaaactgattttggatcattttgataaaggattgaa 407  Q
    ||||||||  ||| | ||||  | |  |||||  | || ||||||||| | || || |  |||||||| |  ||||| |||||||| |||||||||||||    
T  15448898 cataaaatcagaaagcatga--actcaggaccattatcagatctgacaaatttgggagtgacatgaaattagttttgaatcattttaataaaggattgaa 15448801  T
Q  408 catgatgggaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaatggttaaaaaatattaatggccatgaatgga 507  Q
    ||||||| | |||||||||||| ||||| ||||| |||||||| | ||| |||||||| ||||| || |||||||| ||||||| ||| ||||| |||||    
T  15448800 catgatgagcaacttcagctttagatttcagtaaaatgatccacaaaaatctactatggtcatcaactatggttaagaaatatttatgaccatgtatgga 15448701  T
Q  508 tgtaacagataatggaccc 526  Q
     | ||||||||| ||||||    
T  15448700 -gaaacagataaaggaccc 15448683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 185 - 307
Target Start/End: Original strand, 20324013 - 20324135
Alignment:
Q  185 aggaagtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagac 284  Q
    ||||||||| |||||| | ||  | ||||| |||||||||||||||||| | | ||| || || |||||||||||||| || |||||||| ||||||||     
T  20324013 aggaagtttagattgatacaacagagctctaccaacattcaaaatatgttgatgtttcctctcaactctaccattttgttgaggagtttcaacacaagat 20324112  T
Q  285 ctttgatgaatcataccatgaga 307  Q
     |||||||||| || ||||||||    
T  20324113 ttttgatgaataatgccatgaga 20324135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 416 - 503
Target Start/End: Original strand, 16991045 - 16991132
Alignment:
Q  416 gaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaatggttaaaaaatattaatggccatgaa 503  Q
    |||||||||||||||| ||||||||| |||| |||||  || ||||||  |||||| || ||||||| |||||| | |||||||||||    
T  16991045 gaaacttcagctttggttttaagtaaaatgacccataagaatctactaaaatcatcaactatggttagaaaatacttatggccatgaa 16991132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 17386946 - 17386875
Alignment:
Q  210 gctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaa 281  Q
    |||||||| ||||||||||||||| | | |||||| ||||| || |||||||| ||||||| ||| ||||||    
T  17386946 gctcttcctacattcaaaatatgttgatgttttctctctacccttccattttgttggggagattccacacaa 17386875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 26466773 - 26466876
Alignment:
Q  191 tttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagacctttga 290  Q
    |||||||||||||||  | ||||| |||||||| ||||| ||  | | ||||||||| || || |||||||| |||||||| || ||||||||| | |||    
T  26466773 tttggattgaaataacagagctctgccaacatttaaaatgtgctgatgttttctttcaaccctcccattttgttggggagtctcaacacaagacttatga 26466872  T
Q  291 tgaa 294  Q
    ||||    
T  26466873 tgaa 26466876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 26472179 - 26472136
Alignment:
Q  240 tttctttctactctaccattttgctggggagtttctacacaaga 283  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||    
T  26472179 tttctttcaactctaccattttgttggggagtttcaacacaaga 26472136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 612
Target Start/End: Complemental strand, 11924231 - 11924162
Alignment:
Q  543 aagctcaaaatttgaaaaagcatgtgaaatactagattgaaaaggtaaatgtttctgcttagcaaaatga 612  Q
    ||||||||||||   | |||||||||||| ||||||   |||||||||||| || |||||||||||||||    
T  11924231 aagctcaaaattgacagaagcatgtgaaagactagaagtaaaaggtaaatgcttatgcttagcaaaatga 11924162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 11326 - 11197
Alignment:
Q  189 agtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagaccttt 288  Q
    |||||||||||||||||    ||||| || ||||| | ||||||| ||| ||| |||||||||||||||||||| ||||||||||| ||||||||  |||    
T  11326 agtttggattgaaataataaagctctacctacattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaagattttt 11227  T
Q  289 gatgaatcataccatgagattcataaaatg 318  Q
    ||||||| |||||||| ||  |||||||||    
T  11226 gatgaattataccatgtgaagcataaaatg 11197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 611
Target Start/End: Complemental strand, 11098 - 10902
Alignment:
Q  416 gaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaatggttaaaaaatattaatggccatgaatggatgtaacag 515  Q
    |||||||| ||||||||||||||||| || | ||| ||||| || ||||||||||| ||||| || | ||| |||   || ||||| |  |||| || ||    
T  11098 gaaacttctgctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaatagtaagaaagtatctgtgaccatgtacagatgcaatag 10999  T
Q  516 ataatgga-cccaaatgttaaaatgtaaaagctcaaaatttgaaaaagcatgtgaaatactagattgaaaaggtaaatgtttctgcttagcaaaatg 611  Q
    |||||||| ||||||| | || ||| |  |  |||||||| | | ||||||| |||||||| || |  |||||||||||||| || |||||||||||    
T  10998 ataatggaccccaaatatcaagatgaagtaattcaaaattggtagaagcatgagaaatactggaattgaaaggtaaatgtttatgtttagcaaaatg 10902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 189 - 318
Target Start/End: Original strand, 22176905 - 22177034
Alignment:
Q  189 agtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagaccttt 288  Q
    |||||||||||||||||    ||||| || ||||| | ||||||| ||| ||| |||||||||||||||||||| ||||||||||| ||||||||  |||    
T  22176905 agtttggattgaaataataaagctctacctacattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaagattttt 22177004  T
Q  289 gatgaatcataccatgagattcataaaatg 318  Q
    ||||||| |||||||| ||  |||||||||    
T  22177005 gatgaattataccatgtgaagcataaaatg 22177034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 191 - 316
Target Start/End: Complemental strand, 35087519 - 35087394
Alignment:
Q  191 tttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagacctttga 290  Q
    |||||||||||||||    ||||| |||||||| | ||||||| | | |||||| |||||||| |||||||||||||||||||| ||||||||  | |||    
T  35087519 tttggattgaaataataaagctctgccaacattgagaatatgttgatgttttctctctactctcccattttgctggggagtttcaacacaagatttctga 35087420  T
Q  291 tgaatcataccatgagattcataaaa 316  Q
    ||||  |||||||||||| |||||||    
T  35087419 tgaacaataccatgagatgcataaaa 35087394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 5239642 - 5239569
Alignment:
Q  210 gctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaaga 283  Q
    ||||| |||||||| ||||| ||| | | ||||||||| |||||||||||||| ||||||||||||||||||||    
T  5239642 gctctaccaacatttaaaatgtgttgatgttttctttcaactctaccattttgttggggagtttctacacaaga 5239569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 10653039 - 10652966
Alignment:
Q  210 gctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaaga 283  Q
    ||||| |||||||| ||||| ||| | | ||||||||| |||||||||||||| ||||||||||||||||||||    
T  10653039 gctctaccaacatttaaaatgtgttgatgttttctttcaactctaccattttgttggggagtttctacacaaga 10652966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 10867184 - 10867111
Alignment:
Q  210 gctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaaga 283  Q
    ||||| |||||||| ||||| ||| | | ||||||||| |||||||||||||| ||||||||||||||||||||    
T  10867184 gctctaccaacatttaaaatgtgttgatgttttctttcaactctaccattttgttggggagtttctacacaaga 10867111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 305
Target Start/End: Complemental strand, 22643664 - 22643554
Alignment:
Q  195 gattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagacctttgatgaa 294  Q
    |||||||||||   ||||||  ||||||||||||||||| | |  |||||||| || || |||||||| ||||||||||| ||||| ||  | |||||||    
T  22643664 gattgaaataacaaggctctaacaacattcaaaatatgttgatgctttctttcaaccctcccattttgttggggagtttcaacacatgatttgtgatgaa 22643565  T
Q  295 tcataccatga 305  Q
    | |||||||||    
T  22643564 taataccatga 22643554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 611
Target Start/End: Original strand, 22177133 - 22177329
Alignment:
Q  416 gaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaatggttaaaaaatattaatggccatgaatggatgtaacag 515  Q
    |||||||| ||||||||||||||||| || | ||| ||||| || ||||||||||| ||||| || | ||| |||   || ||||| |  |||| || ||    
T  22177133 gaaacttctgctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaatagtaagaaagtatctgtgaccatgtacagatgcaatag 22177232  T
Q  516 ataatgga-cccaaatgttaaaatgtaaaagctcaaaatttgaaaaagcatgtgaaatactagattgaaaaggtaaatgtttctgcttagcaaaatg 611  Q
    |||||||| ||||||| | || ||| |  |  |||||||| | | ||||||| |||||||| || |  |||||||||||||| || |||||||||||    
T  22177233 ataatggaccccaaatatcaagatgaagtaattcaaaattggtagaagcatgagaaatactggaattgaaaggtaaatgtttatgtttagcaaaatg 22177329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 415 - 503
Target Start/End: Original strand, 23167638 - 23167726
Alignment:
Q  415 ggaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaatggttaaaaaatattaatggccatgaa 503  Q
    ||||||||||||||||| |||||| |  || ||||| || || |||||||||||||| | ||| ||||||||||||   ||||||||||    
T  23167638 ggaaacttcagctttggttttaaggagaataatccaaaggaatctactatgatcatctaaaatagttaaaaaatatatgtggccatgaa 23167726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 19034840 - 19034758
Alignment:
Q  186 ggaagtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctgggg 268  Q
    ||||||||| ||||| ||||| ||||| |||| |||||   ||| ||| ||| ||||||||||||||||||||| || |||||    
T  19034840 ggaagtttgaattgatataaaagggcttttcctacattgcgaatgtgttggtgttttctttctactctaccattctgttgggg 19034758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 614
Target Start/End: Complemental strand, 22643297 - 22643243
Alignment:
Q  560 aagcatgtgaaatactagattgaaaaggtaaatgtttctgcttagcaaaatgaca 614  Q
    ||||||| ||||||||||||  ||||||||||||||| || |||||| |||||||    
T  22643297 aagcatgagaaatactagatgaaaaaggtaaatgtttatgtttagcataatgaca 22643243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 611
Target Start/End: Complemental strand, 10652829 - 10652636
Alignment:
Q  419 acttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaatggttaaaaaatattaatggccatgaatggatgtaacagata 518  Q
    ||||||||||||| |||||| |  |||| ||| ||||| || || |||||||| | |||||| | |||||||  ||| |||||||| || | ||| || |    
T  10652829 acttcagctttggttttaagaagaatgacccagagaaatctgctgtgatcatctaaaatggtgagaaaatatctatgaccatgaattgaagcaactgaaa 10652730  T
Q  519 atgga-cccaaatgttaaaatgtaaaagctcaaaatttgaaaaagcatgtgaaatactagattgaaaaggtaaatgtttctgcttagcaaaatg 611  Q
      ||| |||||||||  ||||| | ||| |||||||| | || ||||| ||||  |||||| |  |||||||||||||| ||||| ||||||||    
T  10652729 gaggaccccaaatgtctaaatggagaagttcaaaattagtaacagcatatgaagaactagaattgaaaggtaaatgtttgtgcttggcaaaatg 10652636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 611
Target Start/End: Complemental strand, 10866974 - 10866781
Alignment:
Q  419 acttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaatggttaaaaaatattaatggccatgaatggatgtaacagata 518  Q
    ||||||||||||| |||||| |  |||| ||| ||||| || || |||||||| | |||||| | |||||||  ||| |||||||| || | ||| || |    
T  10866974 acttcagctttggttttaagaagaatgacccagagaaatctgctgtgatcatctaaaatggtgagaaaatatctatgaccatgaattgaagcaactgaaa 10866875  T
Q  519 atgga-cccaaatgttaaaatgtaaaagctcaaaatttgaaaaagcatgtgaaatactagattgaaaaggtaaatgtttctgcttagcaaaatg 611  Q
      ||| |||||||||  ||||| | ||| |||||||| | || ||||| ||||  |||||| |  |||||||||||||| ||||| ||||||||    
T  10866874 gaggaccccaaatgtctaaatggagaagttcaaaattagtaacagcatatgaagaactagaattgaaaggtaaatgtttgtgcttggcaaaatg 10866781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 52777997 - 52777868
Alignment:
Q  189 agtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagaccttt 288  Q
    |||||||||||||||||    ||||| || ||||| | ||||||| ||| ||| |||||||||||||||||||| ||||||||||| ||||||||  |||    
T  52777997 agtttggattgaaataataaagctctacctacattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaagattttt 52777898  T
Q  289 gatgaatcataccatgagattcataaaatg 318  Q
    ||||||| |||||||| ||  |||||||||    
T  52777897 gatgaattataccatgtgaagcataaaatg 52777868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 2359859 - 2359786
Alignment:
Q  210 gctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaaga 283  Q
    ||||| |||||||| ||||| ||| | | ||||||||| |||||||||||||| ||||||||||||||||||||    
T  2359859 gctctaccaacatttaaaatgtgttgatgttttctttcaactctaccattttgttggggagtttctacacaaga 2359786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 611
Target Start/End: Complemental strand, 52777769 - 52777573
Alignment:
Q  416 gaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaatggttaaaaaatattaatggccatgaatggatgtaacag 515  Q
    |||||||| ||||||||||||||||| || | ||| ||||| || ||||||||||| ||||| || | ||| |||   || ||||| |  |||| || ||    
T  52777769 gaaacttctgctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaatagtaagaaagtatctgtgaccatgtacagatgcaatag 52777670  T
Q  516 ataatgga-cccaaatgttaaaatgtaaaagctcaaaatttgaaaaagcatgtgaaatactagattgaaaaggtaaatgtttctgcttagcaaaatg 611  Q
    |||||||| ||||||| | || ||| |  |  |||||||| | | ||||||| |||||||| || |  |||||||||||||| || |||||||||||    
T  52777669 ataatggaccccaaatatcaagatgaagtaattcaaaattggtagaagcatgagaaatacttgaattgaaaggtaaatgtttatgtttagcaaaatg 52777573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 402 - 480
Target Start/End: Original strand, 30756154 - 30756232
Alignment:
Q  402 attgaacatgatgggaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaatggt 480  Q
    |||| ||||| || |||||||||||||||| || ||| |  || ||||| ||||||||| |||||||||| ||||||||    
T  30756154 attggacatggtgagaaacttcagctttgggttcaaggagaataatccaaagaaacctattatgatcatcaacaatggt 30756232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 402 - 480
Target Start/End: Original strand, 30763606 - 30763684
Alignment:
Q  402 attgaacatgatgggaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaatggt 480  Q
    |||| ||||| || |||||||||||||||| || ||| |  || ||||| ||||||||| |||||||||| ||||||||    
T  30763606 attggacatggtgagaaacttcagctttgggttcaaggagaataatccaaagaaacctattatgatcatcaacaatggt 30763684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 611
Target Start/End: Complemental strand, 14455628 - 14455423
Alignment:
Q  407 acatgatgggaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaatggttaaaaaatattaatggccatgaatgg 506  Q
    |||||||| |||||| ||||||| | ||||||||| ||| |||| || || ||  |||| ||||| |||||||| || ||||| |  |||||||  |  |    
T  14455628 acatgatgagaaactccagctttagttttaagtaaaatggtccaaaggaatctgatatggtcatcaacaatggtcaagaaatacttgtggccatacagag 14455529  T
Q  507 atgtaacagataatggacccaa-atgttaaaatgtaaaagctcaaaatttgaaaaagcatgtgaaatactagattgaaaaggtaaatgtttctgcttagc 605  Q
    | | ||||||||| |||||| | || | |||||||| || ||||||| | | | ||||||||||||||||||| || ||||     ||||| ||||||||    
T  14455528 aaggaacagataaaggaccccatatatcaaaatgtataatctcaaaaatagtagaagcatgtgaaatactagactggaaagcactgtgtttttgcttagc 14455429  T
Q  606 aaaatg 611  Q
    ||||||    
T  14455428 aaaatg 14455423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 17883723 - 17883800
Alignment:
Q  217 caacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagacctttgatgaa 294  Q
    ||||||| ||||||||| | | ||||| ||| ||  ||||||||||||| || ||||| |||||||||||||| ||||    
T  17883723 caacatttaaaatatgttgatgttttcgttcaacagtaccattttgctgcggggtttccacacaagacctttggtgaa 17883800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 12285617 - 12285488
Alignment:
Q  189 agtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagaccttt 288  Q
    |||||||||||||||||    ||||| || ||||| | ||||||| ||| ||| |||||||||||||||||||| ||||||||||  ||||||||  |||    
T  12285617 agtttggattgaaataataaagctctacctacattgagaatatgttggtgtttcctttctactctaccattttgttggggagttttaacacaagattttt 12285518  T
Q  289 gatgaatcataccatgagattcataaaatg 318  Q
    ||||||| |||||||| ||  |||||||||    
T  12285517 gatgaattataccatgtgaagcataaaatg 12285488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 304
Target Start/End: Original strand, 19586674 - 19586789
Alignment:
Q  189 agtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagaccttt 288  Q
    |||||||||||||||||    ||||| || ||||| | ||| ||| ||| ||| |||||||||||||||||||| ||||||||||| ||||||||  |||    
T  19586674 agtttggattgaaataataaagctctacctacattgagaatgtgttggtgtttcctttctactctaccattttgttggggagtttcaacacaagattttt 19586773  T
Q  289 gatgaatcataccatg 304  Q
    ||||||| || |||||    
T  19586774 gatgaattattccatg 19586789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 416 - 614
Target Start/End: Original strand, 19586902 - 19587101
Alignment:
Q  416 gaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaatggttaaaaaatattaatggccatgaatggatgtaacag 515  Q
    |||||||| ||||||||||||||||| || | ||| ||||| || ||||||||||| ||||| || | ||| |||   || ||||| |  |||| || ||    
T  19586902 gaaacttctgctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaatagtaagaaagtatctgtgaccatgtacagatgcaatag 19587001  T
Q  516 ataatgga-cccaaatgttaaaatgtaaaagctcaaaatttgaaaaagcatgtgaaatactagattgaaaaggtaaatgtttctgcttagcaaaatgaca 614  Q
    |||||||| ||||||| | || ||| |  |  |||||||| | | ||||||| |||||||| || |  |||||||||||||| || ||||||||||||||    
T  19587002 ataatggaccccaaatatcaagatgaagtaattcaaaattggtagaagcatgagaaatacttgaattgaaaggtaaatgtttatgtttagcaaaatgaca 19587101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 7420115 - 7420054
Alignment:
Q  243 ctttctactctaccattttgctggggagtttctacacaagacctttgatgaatcataccatg 304  Q
    |||||||| ||||||||||| ||||||||||| ||||||||  |||| ||||| ||||||||    
T  7420115 ctttctaccctaccattttgttggggagtttcaacacaagatttttggtgaattataccatg 7420054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 17479408 - 17479460
Alignment:
Q  240 tttctttctactctaccattttgctggggagtttctacacaagacctttgatg 292  Q
    |||||||||||||| |||||||| ||||| ||||| ||| |||||||||||||    
T  17479408 tttctttctactctcccattttgttggggggtttcaacataagacctttgatg 17479460  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 8836276 - 8836233
Alignment:
Q  240 tttctttctactctaccattttgctggggagtttctacacaaga 283  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||    
T  8836276 tttctttcaactctaccattttgttggggagtttcaacacaaga 8836233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 13890090 - 13889995
Alignment:
Q  185 aggaagtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacaca 280  Q
    ||||||||| |||||||| | | | |||||||||||||| | ||||||| |||  ||||||| |||||  |||||| | ||||||||||| |||||    
T  13890090 aggaagtttagattgaaaaagaagagctcttccaacattaagaatatgttggtgctttctttttactcacccatttcgttggggagtttcaacaca 13889995  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 55310211 - 55310168
Alignment:
Q  240 tttctttctactctaccattttgctggggagtttctacacaaga 283  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||    
T  55310211 tttctttcaactctaccattttgttggggagtttcaacacaaga 55310168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 7419941 - 7419880
Alignment:
Q  416 gaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaat 477  Q
    |||||||||||||| ||||||||||| || | ||| ||||| || ||||||||||| |||||    
T  7419941 gaaacttcagctttagatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 7419880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 12285389 - 12285328
Alignment:
Q  416 gaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaat 477  Q
    |||||||| ||||||||||||||||| || | ||| ||||| || ||||||||||| |||||    
T  12285389 gaaacttctgctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 12285328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 38823601 - 38823524
Alignment:
Q  217 caacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagacctttgatgaa 294  Q
    ||||||| ||||||||| | | ||||| ||| ||  ||||||||||||| || ||||| |||||||||||||| ||||    
T  38823601 caacatttaaaatatgttgatgttttcgttcaacagtaccattttgctgcggggtttccacacaagacctttggtgaa 38823524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 526
Target Start/End: Original strand, 44667728 - 44667853
Alignment:
Q  401 gattgaacatgatgggaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatcgacaatggttaaaaaatattaatggccat 500  Q
    |||| |||||||| ||||||||||  |||    |||||||||||||||||||| || || ||||||||||| ||| |||| |  ||||||  ||| ||||    
T  44667728 gatttaacatgattggaaacttcatatttattcttaagtaagatgatccataggaatctgctatgatcatcaacagtggtaaggaaatatctatgtccat 44667827  T
Q  501 gaatggatgtaacagataatggaccc 526  Q
    | ||||| || ||||| || ||||||    
T  44667828 gtatggaagttacagacaaaggaccc 44667853  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 168 - 614
Target Start/End: Complemental strand, 44229830 - 44229381
Alignment:
Q  168 atatgaccaa-aagatgaaggaagtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctgg 266  Q
    |||||||||| |||||| ||| |||||||||||| | ||| | ||||| ||||||||||| |||||  | | ||||||||| ||||||||||| || ||     
T  44229830 atatgaccaataagatgcagggagtttggattgatacaaaagagctctcccaacattcaagatatgatgatgttttctttcaactctaccattctgttga 44229731  T
Q  267 ggagtttctacacaagacctttgatgaatcataccatgagattcataaaatgaaggaatgagaaattc-ggacccatgtctgatctgacatacttagggg 365  Q
    || ||||| ||||||||  ||||||| |  || ||| | ||||||||||| ||   ||| |||||||| || ||  | || ||||| |   | ||||| |    
T  44229730 ggggtttcaacacaagatttttgatgtaaaatgccaagtgattcataaaaagataaaataagaaattcagggccattatcagatctaatgcatttaggag 44229631  T
Q  366 aaacatgaaactgattttggatcattttgataaaggattgaacatgatgggaaacttcagctttggatttaagtaagatgatccatagaaacctactatg 465  Q
      |||||||| ||| |||| | ||||||||| || ||||  ||||||||||| ||  ||| ||| | ||| ||| |||| |||||||  || ||||| ||    
T  44229630 tgacatgaaattgagtttgaaccattttgatgaaagatttgacatgatgggagaccccagatttagttttgagtgagataatccataagaatctactgtg 44229531  T
Q  466 atcatcgacaatggttaaaaaatattaatggccatgaatggatgtaacagataatgga-cccaaatgttaaaatgtaaaagctcaaaatttgaaaaagca 564  Q
    |||||| |||||||| | ||||||||  || |||||||| || |  | ||| |  ||| ||||||||| || ||| ||||| |||||||| |||  ||||    
T  44229530 atcatcaacaatggtgagaaaatatttgtgaccatgaatagaagatatagaaagaggaccccaaatgtcaagatgcaaaagttcaaaattagaagtagca 44229431  T
Q  565 tgtgaaatactagattgaaaa-ggtaaatgtttctgcttagcaaaatgaca 614  Q
    || ||| ||||| || ||||| ||||||||||| || ||||||||||||||    
T  44229430 tgagaagtacta-atggaaaagggtaaatgtttttgtttagcaaaatgaca 44229381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 217 - 313
Target Start/End: Complemental strand, 15757479 - 15757383
Alignment:
Q  217 caacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagacctttgatgaatcataccatgagattcata 313  Q
    ||||||| ||||||||| | |  ||||| |||||||||||||| || || |||||||| |||||||||||||||||||| ||||| |||||| ||||    
T  15757479 caacatttaaaatatgttgatgctttctctctactctaccattatgttgaggagtttcaacacaagacctttgatgaatgataccctgagatgcata 15757383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 21029638 - 21029690
Alignment:
Q  240 tttctttctactctaccattttgctggggagtttctacacaagacctttgatg 292  Q
    |||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||    
T  21029638 tttctttccactcttccattttgttggggggtttcaacacaagacctttgatg 21029690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 19991311 - 19991238
Alignment:
Q  243 ctttctactctaccattttgctggggagtttctacacaagacctttgatgaatcataccatgagattcataaaa 316  Q
    ||||| ||| |||||||||| |  ||||| || |||||||||||||||||||  |||||||||||  |||||||    
T  19991311 ctttcaactataccattttgttcaggagtctcaacacaagacctttgatgaagaataccatgagaggcataaaa 19991238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 347 - 516
Target Start/End: Original strand, 34890996 - 34891165
Alignment:
Q  347 gatctgacatacttaggggaaacatgaaactgattttggatcattttgataaaggattgaacatgatgggaaacttcagctttggatttaagtaagatga 446  Q
    ||||||||| | |||||||  |||||||| || ||||| |||||  | || ||||||| ||||||    | |||||| ||| ||| |||||| || || |    
T  34890996 gatctgacaaatttaggggtgacatgaaattggttttgaatcatggttatgaaggatttaacatgggtagcaacttctgctctggttttaagcaaaataa 34891095  T
Q  447 tccatagaaacctactatgatcatcgacaatggttaaaaaatattaatggccatgaatggatgtaacaga 516  Q
    |||||||||| |||||||||||||| ||||||||||||||||| |  ||||||||||  |||| ||||||    
T  34891096 tccatagaaatctactatgatcatcaacaatggttaaaaaatacttgtggccatgaacagatgaaacaga 34891165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 27036151 - 27036258
Alignment:
Q  210 gctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagacctttgatgaatcataccatgagatt 309  Q
    ||||| |||||||| | ||||||  | | |||||| |||||||| |||||||||||||||||||| |||||||| || |||||||  || |||||||||     
T  27036151 gctctgccaacattgagaatatgctgatgttttctctctactctcccattttgctggggagtttcaacacaagatctctgatgaacaatgccatgagatg 27036250  T
Q  310 cataaaat 317  Q
    ||| ||||    
T  27036251 catcaaat 27036258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 28017535 - 28017426
Alignment:
Q  186 ggaagtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagacc 285  Q
    ||||||||||||||||| ||    |||||  ||||||| | ||| ||||||| |||||| ||||||||| ||||||| |  || |||||||||||||  |    
T  28017535 ggaagtttggattgaaacaacaaagctctagcaacattgagaatgtgtcggtgttttctctctactctagcattttgttcaggtgtttctacacaagctc 28017436  T
Q  286 tttgatgaat 295  Q
    ||||||||||    
T  28017435 tttgatgaat 28017426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1049 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 2393 - 2477
Alignment:
Q  243 ctttctactctaccattttgctggggagtttctacacaagacctttgatgaatcataccatgagattcataaaatgaaggaatga 327  Q
    ||||||||  |||||||||| || ||||| || |||||||||||||||||||| ||||| | |||   |||||||||||| ||||    
T  2393 ctttctacaataccattttgttgaggagtctcaacacaagacctttgatgaatgatacctttagaaagataaaatgaaggcatga 2477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 18481665 - 18481717
Alignment:
Q  240 tttctttctactctaccattttgctggggagtttctacacaagacctttgatg 292  Q
    |||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||    
T  18481665 tttctttccactcttccattttgttggggggtttcaacacaagacctttgatg 18481717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 38847292 - 38847374
Alignment:
Q  210 gctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagacctttgatg 292  Q
    |||||||| | ||||||||| ||| | | ||||||||| ||||| |||||||| || || || || |||||||||||||||||    
T  38847292 gctcttcctatattcaaaatgtgttgatgttttctttccactctcccattttgttgaggtgtctcaacacaagacctttgatg 38847374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 20056509 - 20056416
Alignment:
Q  224 caaaatatgtcggtattttctttctactctaccattttgctg-gggagtttctacacaagacctttgatgaatcataccatgagattcataaaa 316  Q
    |||||||||| ||| ||||||||| || | |||||||||||| ||| ||||||||||| ||  || ||||||| |||| || |||||| |||||    
T  20056509 caaaatatgttggtgttttctttcaacacaaccattttgctgtgggggtttctacacaggattttcgatgaattatactattagattcgtaaaa 20056416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 169996 - 170043
Alignment:
Q  186 ggaagtttggattgaaataaatgggctcttccaacattcaaaatatgt 233  Q
    ||||||||||| ||||||||| | |||||||||||||| |||||||||    
T  169996 ggaagtttggactgaaataaaagagctcttccaacatttaaaatatgt 170043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1416 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 295
Target Start/End: Original strand, 1225 - 1334
Alignment:
Q  186 ggaagtttggattgaaataaatgggctcttccaacattcaaaatatgtcggtattttctttctactctaccattttgctggggagtttctacacaagacc 285  Q
    ||||||||||||||||| ||    |||||  ||||||| | ||| ||| ||| |||||| ||||||||| ||||||| |  || |||||||||||||  |    
T  1225 ggaagtttggattgaaacaacaaagctctagcaacattgagaatgtgtaggtgttttctctctactctagcattttgttcaggtgtttctacacaagctc 1324  T
Q  286 tttgatgaat 295  Q
    ||||||||||    
T  1325 tttgatgaat 1334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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