View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4631-Insertion-7 (Length: 775)
Name: NF4631-Insertion-7
Description: NF4631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4631-Insertion-7 |
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| [»] scaffold0042 (2 HSPs) |
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| [»] scaffold0627 (3 HSPs) |
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Alignment Details
Target: scaffold0042 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 6643 - 6965
Alignment:
| Q |
8 |
aaacgtagagttcccgaatataaatgagacaaattacccgtatgttacattctacccatctaaaatagtttcgccctcgaaactgatactgaagataaat |
107 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
6643 |
aaacgtagatttcccgaatataaatgagacaaattacccggatgttacattctatccacctaaaatagtttcgccctcaaaactgatactgaagataaat |
6742 |
T |
|
| Q |
108 |
tctagatattgctatctcttggaatcgacttgacttatcagctatgagatcaagatttacgcatttatgcttaaagagcacaatgttttaataatgaaac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
6743 |
tctagatattgctatctcttggaatcgacttgacttatcagctatgagatcaagatttacgcatttatgcttaaagagcgcaatgtttcaataatgaaac |
6842 |
T |
|
| Q |
208 |
atactaacaaggttcgagtggtgtatagaaacacacaacatctcttgaagactttagaggacatgaccaacactaaaaggctcattcaaccacctacaac |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
6843 |
atactaacaaggttcgagtggtgtatagaaacaaaaaacatctcatgaagacttccgaggacatgaccagcactaaaaggctcactcaactacctacaac |
6942 |
T |
|
| Q |
308 |
cccacagtccgaactagatcgaa |
330 |
Q |
| |
|
|||||||||||||||| |||||| |
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|
| T |
6943 |
cccacagtccgaactacatcgaa |
6965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 14055 - 14377
Alignment:
| Q |
8 |
aaacgtagagttcccgaatataaatgagacaaattacccgtatgttacattctacccatctaaaatagtttcgccctcgaaactgatactgaagataaat |
107 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14055 |
aaacgtagatttcccgaatataaatgagacaaattacccggatgttacattctatccacctaaaatagtttcgccctcaaaactgatactgaagataaat |
14154 |
T |
|
| Q |
108 |
tctagatattgctatctcttggaatcgacttgacttatcagctatgagatcaagatttacgcatttatgcttaaagagcacaatgttttaataatgaaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
14155 |
tctagatattgctatctcttggaatcaacttgacttatcagctatgagatcaagatttacgcatttatgcttaaagagcgcaatgtttcaataatgaaac |
14254 |
T |
|
| Q |
208 |
atactaacaaggttcgagtggtgtatagaaacacacaacatctcttgaagactttagaggacatgaccaacactaaaaggctcattcaaccacctacaac |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||||| |||||||| ||||| ||||| ||||||||| |
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|
| T |
14255 |
atactaacaaggttcgagtggtgtatagaaacaaaaaacatctcatgaagacttccgaggacatgaccagcactaaaaagctcactcaactacctacaac |
14354 |
T |
|
| Q |
308 |
cccacagtccgaactagatcgaa |
330 |
Q |
| |
|
|||||||||||||||| |||||| |
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|
| T |
14355 |
cccacagtccgaactacatcgaa |
14377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 240; Significance: 1e-132; HSPs: 3)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 27 - 330
Target Start/End: Original strand, 1950 - 2253
Alignment:
| Q |
27 |
ataaatgagacaaattacccgtatgttacattctacccatctaaaatagtttcgccctcgaaactgatactgaagataaattctagatattgctatctct |
126 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| |||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
1950 |
ataaatgagacaaattacccggatgttacattctatccacctaagatagtttctccctcgaagctgatattgaagataaattctagatattgctatctca |
2049 |
T |
|
| Q |
127 |
tggaatcgacttgacttatcagctatgagatcaagatttacgcatttatgcttaaagagcacaatgttttaataatgaaacatactaacaaggttcgagt |
226 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2050 |
tggaatcgacttgacttatcagctatgaaatcaagatttacgcatttatgcttaaagagcacaatgtttcaataatgaaacatactaacaaggttcgagt |
2149 |
T |
|
| Q |
227 |
ggtgtatagaaacacacaacatctcttgaagactttagaggacatgaccaacactaaaaggctcattcaaccacctacaaccccacagtccgaactagat |
326 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||| |
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|
| T |
2150 |
ggtgtatagaaacacaaaacatctcttgaagacttcagaggacatgaccaacactaaaaggctcactcaactacctacaatcccacagttcgaactagat |
2249 |
T |
|
| Q |
327 |
cgaa |
330 |
Q |
| |
|
|||| |
|
|
| T |
2250 |
cgaa |
2253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 505 - 775
Target Start/End: Original strand, 2561 - 2836
Alignment:
| Q |
505 |
acaaggagctatattcaaacatattctagccattgaatagaaaattaagatatactatttcaattgaaataaattcgtaaaaaggtccctacttcaattc |
604 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | |||||||||| |
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|
| T |
2561 |
acaaggagctatattcaaacatattctaaccattgaatagaaaattaagatatactatttcaattcaaataaatttgtaaaaagtt----acttcaattc |
2656 |
T |
|
| Q |
605 |
tatgtttaactcaaaattgcatttaatatttttctnnnnnnncaatctgtata-----------ttatcattctttaattttcaaaaacataaattgatt |
693 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2657 |
tatgtttaactcaaaattgcatttaatattt--ctaaaaaaacaatctgtatatactctatatattatcattctttaattttcaaaaacataaattgatt |
2754 |
T |
|
| Q |
694 |
cctaaaaacaaactaataatgagagagagaatataagacagaaaaatattcttacttggattggattgggttagcacgttta |
775 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755 |
cctaaaaacaaactaataatgagagagagaatataagacagaaaaatattcttacttggattggattgggttagcacgttta |
2836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 331 - 502
Target Start/End: Original strand, 2361 - 2533
Alignment:
| Q |
331 |
gtagagataaggtattgttttcaaattctaaatccaatcaagagttacggttcttaaatcaacgatttatatcctgcatagccactaatataaattcggt |
430 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2361 |
gtagagataaggtgttgttttcaaattctaaatccaatcaagagttacggttcttatatcaacgatttatatcctgcatagccactaatataaattcggt |
2460 |
T |
|
| Q |
431 |
gctcat-atttatttttaacaaacagaaagctttcaatcctctaataattttcaaactaggctatgaacttaa |
502 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2461 |
gctcataatttatttttaacaaacagaaagctatcaatcctctaataattttcaaactaggctatgaacttaa |
2533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 26262046 - 26262131
Alignment:
| Q |
198 |
ataatgaaacatactaacaaggttcgagtggtgtatagaaacacacaacatctcttgaagactttagaggacatgaccaacactaa |
283 |
Q |
| |
|
|||| ||||||| | ||||||||||||||| | || | ||| ||||| |||||||||||| |||| ||||||||||||| |||||| |
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|
| T |
26262046 |
ataaggaaacattcaaacaaggttcgagtgttctacaaaaatacacaccatctcttgaaggctttggaggacatgaccagcactaa |
26262131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 28386677 - 28386638
Alignment:
| Q |
52 |
ttacattctacccatctaaaatagtttcgccctcgaaact |
91 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
28386677 |
ttacattctacccacctaaaatagtttcgtcctcgaaact |
28386638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 19633629 - 19633670
Alignment:
| Q |
52 |
ttacattctacccatctaaaatagtttcgccctcgaaactga |
93 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
19633629 |
ttacattctacccacctaaaatagtttcgtcctcaaaactga |
19633670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 7094849 - 7094889
Alignment:
| Q |
52 |
ttacattctacccatctaaaatagtttcgccctcgaaactg |
92 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7094849 |
ttacattctacccacctaaaatagtttcgtcctcgaaactg |
7094889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 29821146 - 29821105
Alignment:
| Q |
52 |
ttacattctacccatctaaaatagtttcgccctcgaaactga |
93 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
29821146 |
ttacattctacctacctaaaatagtttcgtcctcgaaactga |
29821105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 8376952 - 8376912
Alignment:
| Q |
52 |
ttacattctacccatctaaaatagtttcgccctcgaaactg |
92 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
8376952 |
ttacattctacccacctaaaatagtttcgtcctcgaaactg |
8376912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 15424807 - 15424768
Alignment:
| Q |
52 |
ttacattctacccatctaaaatagtttcgccctcgaaact |
91 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
15424807 |
ttacattctacccacctaaaatagtttcgtcctcgaaact |
15424768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 37628100 - 37628141
Alignment:
| Q |
52 |
ttacattctacccatctaaaatagtttcgccctcgaaactga |
93 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
37628100 |
ttacattctacccacctaaaatagtttcgtcctcaaaactga |
37628141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 37807230 - 37807271
Alignment:
| Q |
52 |
ttacattctacccatctaaaatagtttcgccctcgaaactga |
93 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
37807230 |
ttacattctacccacctaaaatagtttcgtcctcaaaactga |
37807271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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