View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4631-Insertion-8 (Length: 729)
Name: NF4631-Insertion-8
Description: NF4631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4631-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 424
Target Start/End: Complemental strand, 12867678 - 12867255
Alignment:
| Q |
8 |
aaatggtataccctgtgttggattattggttttcacattaaaaaatcagtaatacatcttagaataaataaaaaagctaaatgaatgcaatttctaactt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12867678 |
aaatggtataccctgtgttggattattggttttcacattaaaaaatcagtaatacatcttagaataaataaaaaagctaaatgaatgcaatttctaactt |
12867579 |
T |
|
| Q |
108 |
tcaattcacacacgtacgtataattaagaatatcacgatta-----taacaattaatctcgttaaggaattgatattgagagttaactcaaaattttatc |
202 |
Q |
| |
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|||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12867578 |
tcaactcacacacgtaa----aattaagaatatcaccattagtacataacaattaatctcgttaaggaattgatattgagagttaactcaaaattttatc |
12867483 |
T |
|
| Q |
203 |
acatacaca--aaatattttattttatttctatattaccaataaaagtgatcaaataaaatattttgttaccataagatctcttttaatgtatgtcattt |
300 |
Q |
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|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12867482 |
acatacacataaaatattttattttatttctatattaccaataaaagtgatcaaataaaatattttgttaccataagatctcttttaatgtatgtcattt |
12867383 |
T |
|
| Q |
301 |
ggatcacacacacgaagaagttcttatcagaataaaacttgttcttgactttatcatacaaaacttggcttcgctccttaagatcatc------accact |
394 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
12867382 |
ggatcac--acacgaagaagttcttatcagaatgaaacttgttcttcactttatcatacaaaacttggcttcgctccttaagatcatcacaactacaact |
12867285 |
T |
|
| Q |
395 |
aattcctcctaagaaattgagtaattcacc |
424 |
Q |
| |
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| ||||| |||||||||||||||||||||| |
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| T |
12867284 |
agttcctgctaagaaattgagtaattcacc |
12867255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 519 - 729
Target Start/End: Complemental strand, 12867161 - 12866951
Alignment:
| Q |
519 |
ccaaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
12867161 |
ccaaccattgtccacatccttaaaattatgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcttctggattgtttttc |
12867062 |
T |
|
| Q |
619 |
atcttcttagaaactccagaatctggtgatgaagattttggccttttacctcgccgtgatgatggatccttaataattttcaaagaattgtcgctctttt |
718 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12867061 |
atcttcttagaaactccagaagacggtgatgaagattttggccttttacctcgccgtgatgaaggatccttaataattttcaaagaattgtcgctctttt |
12866962 |
T |
|
| Q |
719 |
caacctcttca |
729 |
Q |
| |
|
||||||||||| |
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|
| T |
12866961 |
caacctcttca |
12866951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 521 - 632
Target Start/End: Complemental strand, 15134395 - 15134284
Alignment:
| Q |
521 |
aaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttcat |
620 |
Q |
| |
|
||||||||| || ||||||||||||| ||||| |||| || | ||||| | || |||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
15134395 |
aaccattgttcatatccttaaaattatgaaattttgcttgagattggaatattttcttctcatgcttagattctttttgttcctctgggttgattttcat |
15134296 |
T |
|
| Q |
621 |
cttcttagaaac |
632 |
Q |
| |
|
||||||| |||| |
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|
| T |
15134295 |
cttcttacaaac |
15134284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 15134662 - 15134613
Alignment:
| Q |
247 |
gtgatcaaataaaatattttgttaccataagatctcttttaatgtatgtc |
296 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| | ||||| |||| |
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|
| T |
15134662 |
gtgatcaaataaaatagtttgttaccaaaagatctctctcaatgtgtgtc |
15134613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 243 - 401
Target Start/End: Complemental strand, 49743292 - 49743134
Alignment:
| Q |
243 |
aaaagtgatcaaataaaatattttgttaccataagatctcttttaatgtatgtcatttggatcacacacacgaagaagttcttatcagaataaaacttgt |
342 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | |||| | |||||||||||| ||||||||| ||||| |||||| | | |||||| | || | |
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|
| T |
49743292 |
aaaagtgatcaaataaaatgttttgttaccaagacatctttcttaatgtatgtcttttggatcatacacatgaagaaatccatatcagcgtggaaaaaat |
49743193 |
T |
|
| Q |
343 |
tcttgactttatcatacaaaacttggcttcgctccttaagatcatcaccactaattcct |
401 |
Q |
| |
|
|||| ||||| || |||||||||| ||||| ||||||||||||||||| |||| ||||| |
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|
| T |
49743192 |
tcttcactttgtcgtacaaaactttgcttctctccttaagatcatcacaactacttcct |
49743134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 519 - 623
Target Start/End: Complemental strand, 49743020 - 49742916
Alignment:
| Q |
519 |
ccaaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttc |
618 |
Q |
| |
|
||||||||||||| |||||| || ||| |||| ||| | ||| ||||||||||||||||||||||||||| |||||||||||| | || ||| ||||| |
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|
| T |
49743020 |
ccaaccattgtccgtatccttgaagttaagaaaccttccttgttcttggacttttctcttctcatgcttaggttctttttgttcttttgaattgattttc |
49742921 |
T |
|
| Q |
619 |
atctt |
623 |
Q |
| |
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||||| |
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|
| T |
49742920 |
atctt |
49742916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 49743951 - 49743871
Alignment:
| Q |
42 |
acattaaaaaatcagtaatacatcttagaataaata--aaaaagctaaatgaatgcaatttctaactttcaattcacacac |
120 |
Q |
| |
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||||||||| ||||| |||||| || |||||||||| |||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
49743951 |
acattaaaatatcagcaatacaactcagaataaatactaaaaggctaaatggatgcaatttctaactttcaatgcacacac |
49743871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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