View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4631_low_2 (Length: 529)
Name: NF4631_low_2
Description: NF4631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4631_low_2 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 12467137 - 12467351
Alignment:
| Q |
10 |
catcatcatctgttggagtttctgtcaccttctcccaagtttgtgtaatgtttctgcatggatatgagtacatgtaatccattattttcaatgatccatt |
109 |
Q |
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| T |
12467137 |
catcatcatctgttggagtttgtgtcaccttctcccatgtttgtgtaatgtttctgcatggatatgagtacatgtaatccattattttcaatgatccatt |
12467236 |
T |
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| Q |
110 |
caaaaactaattatggaagactacattaagcaaatcacattcaattatacaaatgcacagcttaaaatatatgtataaggaccttaaataatttgggtat |
209 |
Q |
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| T |
12467237 |
aaaaaactaattatggaagactacattaagcaaatcacattcaattatacaaatgcacagcttaaaatatatgtataaggaccttaaataatttgggcat |
12467336 |
T |
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| Q |
210 |
ttgcattaaatttat |
224 |
Q |
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| T |
12467337 |
atgcattaaatttat |
12467351 |
T |
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Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 478756 - 478700
Alignment:
| Q |
13 |
catcatctgttggagtttctgtcaccttctcccaagtttgtgtaatgtttctgcatg |
69 |
Q |
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| T |
478756 |
catcatctgttggagtttctgtcaccttctcccatgtttgtgtagttcttctgcatg |
478700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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