View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4631_low_8 (Length: 283)
Name: NF4631_low_8
Description: NF4631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4631_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 44692547 - 44692281
Alignment:
| Q |
1 |
acaattgttcctcccacacnnnnnnncgccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagagaa |
100 |
Q |
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| T |
44692547 |
acaattgttcctcccacacaaaaaaacgccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagagaa |
44692448 |
T |
|
| Q |
101 |
caatctaggatatttacctcgaaagggaactccacccctccatctcgcataccaaaacttagtattaaccccgttcctcaccttcctagccacctcttca |
200 |
Q |
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| T |
44692447 |
caatctagaatatttacctcgaaagggaactccacccctccatctcgcataccaaaacttagtattaaccccgttcctcaccttcctagccacctcttca |
44692348 |
T |
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| Q |
201 |
ttgaaccaactcggcccaccacaaccctctagattgacaatatccttccaccacctagaggagtttg |
267 |
Q |
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| T |
44692347 |
ttgaaccaactcggcccaccacaaccctctagattgacaatatccttccaccacctagaggagtttg |
44692281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 34866690 - 34866777
Alignment:
| Q |
29 |
ccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagagaacaatctaggatattta |
116 |
Q |
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| T |
34866690 |
ccactccaccatcggaccggtattcaccccaatctccgcaaccaatgcctctttttggttcgacatagagaataatctaggatattta |
34866777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 12830121 - 12830039
Alignment:
| Q |
60 |
atattcgccaccatagcctctttttggtttgacatagagaacaatctaggatatttacctcgaaagggaactccacccctcca |
142 |
Q |
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|||| ||||||||| ||||||||||||||| |||| | ||| ||||| ||||||||| | || |||| ||| ||||||||||| |
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| T |
12830121 |
atatccgccaccattgcctctttttggtttaacattgcgaataatcttggatatttatcacggaaggcaacaccacccctcca |
12830039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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