View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4632-Insertion-1 (Length: 845)
Name: NF4632-Insertion-1
Description: NF4632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4632-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 517
Target Start/End: Complemental strand, 33903353 - 33902845
Alignment:
| Q |
8 |
actagtgctggtgaatcattgataccatctcctaccattcctactgtgtatccagaattctgccaccaagtatgtcaaataactatcacatgattgtcta |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33903353 |
actagtgctggtgaatcattgataccatctcctaccattcctactgtgtatccagaattctgccaccaagtatgtcaaataactatcacaagattgtcta |
33903254 |
T |
|
| Q |
108 |
aagattatataggattaatatatttttggtccctacaaaatttaattatttgaagtctaagtaaattttgttcaattttaatatnnnnnnnnnntgaagg |
207 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33903253 |
aagattatatagggttaatatatttttggtccctacaaattttaattatttgaagtctaagtaaattttgttcaattttaatatataaaaaaa-tgaagg |
33903155 |
T |
|
| Q |
208 |
tttaaatatgattttagtttttgcaattattgcaaattattttgaactcggataaataaagtctgaccaaaaattgttgccagcaaaaatcgaattcgag |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33903154 |
tttaaatatgattttagtttttgcaattattgcaaattattttgaactcggataaataaagtctgaccaaaaattgttgccagcaaaaatcaaattcgag |
33903055 |
T |
|
| Q |
308 |
ttttcctgaatgattcgtcctagaggagcttattgactatttgagtccaattacttggttagtcccgctaaatattttgttcagattcaatccttacaaa |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33903054 |
ttttcctgaatgattcgtcctagaggagcttattgactatttgagtccaattacttggttagtccagctaaatattttgttcagattcaatccttacaaa |
33902955 |
T |
|
| Q |
408 |
ttaaacacggttggttttagtctctgacgtcatatgtgacccaataaaatcacgtcacgtgacccaataagctgatgttaaagactaataaacagcggtt |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||| |
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| T |
33902954 |
ttaaacacggttggttttagtctctgacgtcatatgtgacccaataaaatcacgtcacgtgacccaataagctgacgttaaagattaaataacagcagtt |
33902855 |
T |
|
| Q |
508 |
attgaatttg |
517 |
Q |
| |
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|||||||||| |
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|
| T |
33902854 |
attgaatttg |
33902845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Complemental strand, 33920343 - 33919898
Alignment:
| Q |
8 |
actagtgctggtgaatcattgataccatctcctaccattcctactgtgtatccagaattctgccaccaagtatgtcaaataactatcacatgattgtcta |
107 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33920343 |
actagtgctggtgaatcatttataccatctcctaccattcctactgtgtatccagaattctgccaccaagtatgtcaaataactatcacatgattgtcta |
33920244 |
T |
|
| Q |
108 |
aagattatataggattaatatatttttggtccctacaaaatttaattatttgaagtctaagtaaattttgttcaattttaatatnnnnnnnnnntgaagg |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33920243 |
aagattatatagggttaatatatttttggtccctacaaattttaattatttgaagtctaagtaaattttgttcaattttaatatataaaaaaaatgaagg |
33920144 |
T |
|
| Q |
208 |
tttaaatatgattttagtttttgcaattattgcaaattattttgaactcggataaataaagtctgaccaaaaattgttgccagcaaaaatcgaattcgag |
307 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33920143 |
tt-aaatatgattttagtttttgcaattattgcaaattattttgaactcggataaataaagtctgaccaaaaattgttgccagcaaaaatcaaattcgag |
33920045 |
T |
|
| Q |
308 |
ttttcctgaatgattcgtcctagaggagcttattgactatttgagtccaattacttggttagtcccgctaaatattttgttcagattcaatccttacaaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33920044 |
ttttcctgaatgattcgtcctagaggagcttattgactatttgagtcaaattacttggttagtcccgctaaatattttgttcagattcaatccttacaaa |
33919945 |
T |
|
| Q |
408 |
ttaaacacggttggttttagtctctgacgtcatatgtgacccaataa |
454 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33919944 |
ttaaacacgattggttttagtctctgacgtcatatgtgacccaataa |
33919898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 466 - 845
Target Start/End: Complemental strand, 33919909 - 33919532
Alignment:
| Q |
466 |
gtgacccaataagctgatgttaaagactaataaacagcggttattgaatttgcacggacccaatccaaataaaaaattttagagactaaaaccaataaac |
565 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |
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| T |
33919909 |
gtgacccaataagctgacgttaaagactaaaaaacagcagttattgaatttgcacggactcaatccaaataaaattttttagagattaaaaccaataaac |
33919810 |
T |
|
| Q |
566 |
actataataattgaataagtgtcctacaatgaacaaagtattaaaaccatgagaggaaaccctaaaggagtgaagcaataatttggtaattggggaccat |
665 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33919809 |
actataataattgaataaatgtcctacaatgaacaaagtattaaaaccatgagaggaaaccctaaaggagtgaagcaataatttggtaattggggaccat |
33919710 |
T |
|
| Q |
666 |
aattttgtgtgtaccctgcaattcttttactttaatagctttagtttcaggttgagcctctgccatgacagtttcaataccagcttgtctggctatagaa |
765 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33919709 |
aattttgtgtgta-cctgcaattcttttactttaatagctttagtttcaggttgagcctctgccatgacagtttcaataccagcttgtctagctatagaa |
33919611 |
T |
|
| Q |
766 |
tttgcagttccccaattatcacctgtcaccattatgctctttattttcatgggatttaagaatagaaaaaccttcttttg |
845 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| |
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| T |
33919610 |
tttgcagttccccaattatcacctgtcaccattatgctctttattttcat-ggatttaagaatagaaataacttcttttg |
33919532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 627 - 845
Target Start/End: Complemental strand, 33902668 - 33902452
Alignment:
| Q |
627 |
ctaaaggagtgaagcaataatttggtaattggggaccataattttgtgtgtaccctgcaattcttttactttaatagctttagtttcaggttgagcctct |
726 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33902668 |
ctaaaggagtgaagcaataatttggtaattggggaccataattttgtgtgtacc-tgcaattcttttactttaatagctttagtctcaggttgagcctca |
33902570 |
T |
|
| Q |
727 |
gccatgacagtttcaataccagcttgtctggctatagaatttgcagttccccaattatcacctgtcaccattatgctctttattttcatgggatttaaga |
826 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33902569 |
gccatgacagtttcaataccagcttgtctagctatagaatttgcagttccccaattatcacctgtcaccattatgctctttattttcat-ggatttaaga |
33902471 |
T |
|
| Q |
827 |
atagaaaaaccttcttttg |
845 |
Q |
| |
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||||||| | ||||||||| |
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| T |
33902470 |
atagaaataacttcttttg |
33902452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 422 - 480
Target Start/End: Original strand, 26556080 - 26556138
Alignment:
| Q |
422 |
ttttagtctctgacgtcatatgtgacccaataaaatcacgtcacgtgacccaataagct |
480 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26556080 |
ttttagtctctaacgtcatacatgacccaataaaatcatgtcacgtgacccaataagct |
26556138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 421 - 459
Target Start/End: Complemental strand, 34409641 - 34409603
Alignment:
| Q |
421 |
gttttagtctctgacgtcatatgtgacccaataaaatca |
459 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
34409641 |
gttttagtctctgacgtcatatgtaacccaatataatca |
34409603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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