View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4632-Insertion-2 (Length: 703)

Name: NF4632-Insertion-2
Description: NF4632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4632-Insertion-2
NF4632-Insertion-2
[»] chr5 (1 HSPs)
chr5 (8-677)||(14545615-14546278)


Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 8 - 677
Target Start/End: Complemental strand, 14546278 - 14545615
Alignment:
Q  8 agtatgtcatgatttatgaatagaaacaaacttacttcattgaatgtattttctgtataaattttcgtaacagaaactttaacagattaagcatgatacg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14546278 agtatgtcatgatttatgaatagaaacaaacttacttcattgaatgtattttctgtataaattttcttaacagaaactttaacagattaagcatgatacg 14546179  T
Q  108 tgtctctatgagctggaaagcatacaaaatcaaaactattgtataaagaattaaaagaagaaacaatttgataggaagcaagaaaatttggtcagtgtat 207  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14546178 tgtctctatgagctggaaagcatacaaaatcaaaactatagtataaagaattaaaagaagaaacaatttgataggaagcaagaaaatttggtcagtgtat 14546079  T
Q  208 tgaatctaggccactgtttgcaatgtcaagttagaaagtccttgttgttcataaaaactgaacattattcacgaggatgaagcagataagctagtaataa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14546078 tgaatctaggccactgtttgcaatgtcaagttagaaagtccttgttgttcataaaaactgaacattattcacgaggatgaagcagataagctagtaataa 14545979  T
Q  308 aacnnnnnnnntattgaaaactatgaagaaatgaagtctgagtagtgatgctaactactcaaaactcaaaagtacaaacaagacaaaaatctctagagta 407  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14545978 aacaaaaaaaatattgaaaactatgaagaaatgaagtctgagtagtgatgctaactactcaaaactcaaaagtacaaacaagacaaaaatctctagagta 14545879  T
Q  408 aagaggctagtgtaattaaagacccgtgtaactgtaaaagaagaaaggtttgaaattgaatgaccaaacaccacaaacttttcttataacaatatcaaac 507  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||      ||||||||||||||||||||||||||||||||||||| |||||||    
T  14545878 aagaggctagtgtaattaaagacccgtgtaactgtaaatgaagaaaggt------ttgaatgaccaaacaccacaaacttttcttataacaaaatcaaac 14545785  T
Q  508 tatcacagattacattacggtttaacagtgaaatctgaaaagcattccataaaactcacgttataactgcacacaaaatttgaccnnnnnnnnnnnnnct 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||             ||    
T  14545784 tatcacagattacattacggtttaacagtgaaatctgaaaagcattccataaaactcacgttataactgaacacaaaatttgaccaaaaacaaaaaaact 14545685  T
Q  608 gcacacgcatagaaagagggtatgtgtgtgtatctgtgtgatgtggatgtattagggtttacctttcttc 677  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14545684 gcacacgcatagaaagagggtatgtgtgtatatctgtgtgatgtggatgtattagggtttacctttcttc 14545615  T

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