View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4632-Insertion-3 (Length: 618)
Name: NF4632-Insertion-3
Description: NF4632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4632-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 8 - 616
Target Start/End: Complemental strand, 42955098 - 42954492
Alignment:
| Q |
8 |
aacacaagatatgcttcaaacttaaaaggacctcttcaggggaaaagaggtggcacaaatcttttcaccctt-attgagtaaaagttgtgctcataacag |
106 |
Q |
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| T |
42955098 |
aacacaagatatgcttcaaacttaaaaggacctcttcaggggaaaagaggtggcacaaatcttttcaccctttattgagtaaaagttgtgctcataacaa |
42954999 |
T |
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| Q |
107 |
ttaaaaatggacattgttgtataattgtattggacagaaattcacccttataattcaaatttggtagaacacccttcagtctcatgaagtcatcactcat |
206 |
Q |
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| T |
42954998 |
ttaaaaatggacattgttgtataattgtattggaca---attcacccttataattcaaatttggtagaacacccttcagtctcatgaagtcatcactcat |
42954902 |
T |
|
| Q |
207 |
attttcatttcttgttgccaacttcatgtcatgacatatatttactatttagagtggaggaaaatcgttattggtttttctttcaactaactattcaaca |
306 |
Q |
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| T |
42954901 |
attttcatttcttgttgccaacttcatgtcatgacatatatttactatttagagtggaggaaaatcgttattggtttttctttcaactaactattcaaca |
42954802 |
T |
|
| Q |
307 |
tattaggatgggaaatcatgtgaaatcgttattttcatttctcatatctttaagaaactaaggttatagttgctttctttctattcattattcattcaca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42954801 |
tattaggatgggaaatcatgtgaaatcgttattttcatttctcatatctttaagaaactaaggttatagttgctttctttctattcattattcattcaca |
42954702 |
T |
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| Q |
407 |
ttatgatttgtcgaatgcatattttaattgatgctactcatggaatatatcatgcagatttcaagagaatggtccacaaacagtatttagctggagaagc |
506 |
Q |
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| T |
42954701 |
ttatgatttgtcgaatgcatattttaattgatgctactcatggaatatatcatgcagatttcaagagaatggtccacaaacagtatttagctggagaagc |
42954602 |
T |
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| Q |
507 |
acctgcacctgaaaattgatttatacaattccaaaacaatggcaactatttttcgcactttagttctaaacatttgtcaaaagaaaacttctgcagccta |
606 |
Q |
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| T |
42954601 |
acctgcacctgaaaattgatttatacaattccaaaacaatggcaactatttttcgcactttagttctaaacatttgtcaaaagaaaacttctgcagccta |
42954502 |
T |
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| Q |
607 |
taaatttccc |
616 |
Q |
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| T |
42954501 |
taaatttccc |
42954492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 413 - 618
Target Start/End: Complemental strand, 42962167 - 42961961
Alignment:
| Q |
413 |
tttgtcgaatgcatattttaattgatgctactcatggaatatatcatgcagatttcaagagaatggtccacaaacagtatttagctggagaagcacctgc |
512 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42962167 |
tttgtcgaatgcatattttaattggtggtactcatggaatatatcatgcagatttcaagagaatggtccacaaacagtatttagctggagaagcacctgc |
42962068 |
T |
|
| Q |
513 |
acctgaaaattgatttatac-aattccaaaacaatggcaactatttttcgcactttagttctaaacatttgtcaaaagaaaacttctgcagcctataaat |
611 |
Q |
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| T |
42962067 |
acctgcaagttgatttatacaaattccaaagcaatagcaattattttccgcacttttgttgtaaacatttgtcgaaagaaaatttctgcagcctataaat |
42961968 |
T |
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| Q |
612 |
ttcccca |
618 |
Q |
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||||||| |
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| T |
42961967 |
ttcccca |
42961961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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