View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4632-Insertion-4 (Length: 540)
Name: NF4632-Insertion-4
Description: NF4632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4632-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 540
Target Start/End: Complemental strand, 46582342 - 46581809
Alignment:
| Q |
8 |
acgagaactccaatgagaggaccaatggagtcatgttgtgatgcaccatggtaggatggttgtgtcactgtaaatggaggaggctgttgttgatacactg |
107 |
Q |
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| T |
46582342 |
acgagaactccaatgagaggaccaatggagtcatgttgtgatgcaccatggtaggatggttgtgtcactgtaaacggaggaggctgttgttgatacactg |
46582243 |
T |
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| Q |
108 |
gcattgacgacgatgaagatgatgac-atta-attgtgtttccttttacagaaactagaacaagttcttagtagttggttgtttggattggtaggttaga |
205 |
Q |
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| T |
46582242 |
gcattgacgacgatgaagatgaagatgatgacattgtgtttccttttacagaaactagaacaagttcttagtagttggttgtttggattggtaggttaga |
46582143 |
T |
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| Q |
206 |
ttgaatgtaaggaagtagttggagaataagcgatgcggagttaaacagaattactactggcaccactttaattacttgtaatgaagattgtaggagagtg |
305 |
Q |
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| T |
46582142 |
ttgaatgtaaggaagtagttggataataagcaatgcggagttaaacagaattactactggcaccactttaattacttgtaatgaagattgtaggagagtg |
46582043 |
T |
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| Q |
306 |
tagaagaatgcatgttattattatttggatgcttggtgagatgttgttatgagacattctcattctgaaattctctttgtaaaggacgacttatattata |
405 |
Q |
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| T |
46582042 |
taaaagaatgcatgttattattatttggatgcttgatgagatgttgttatgagacattctcattctgaaattctcgttgtaaaggatgacttatattata |
46581943 |
T |
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| Q |
406 |
tagcagatataaagaaatatctgctttgcttatttctttagaaagagaaagggtttaagaattttgtattctttgatannnnnnnnnnaatttctcacat |
505 |
Q |
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| T |
46581942 |
tagcagatataaagaaatatctgctttgcttatttctttagaaagagaaagggtttaagaattttgtattctttgat-ttttttttttaatttctcacat |
46581844 |
T |
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| Q |
506 |
atttacttcaccagaatagaatcactgtcatacta |
540 |
Q |
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| T |
46581843 |
atttacttcactagaatagaatcactgtcatacta |
46581809 |
T |
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