View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4632-Insertion-5 (Length: 384)

Name: NF4632-Insertion-5
Description: NF4632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4632-Insertion-5
NF4632-Insertion-5
[»] chr6 (2 HSPs)
chr6 (73-289)||(24197358-24197577)
chr6 (176-221)||(18859877-18859922)
[»] chr3 (2 HSPs)
chr3 (90-311)||(47697454-47697678)
chr3 (253-287)||(15324578-15324612)
[»] chr5 (3 HSPs)
chr5 (152-289)||(43449223-43449364)
chr5 (185-221)||(10028400-10028436)
chr5 (185-221)||(30343133-30343169)
[»] scaffold0225 (1 HSPs)
scaffold0225 (176-221)||(11104-11149)
[»] scaffold0029 (1 HSPs)
scaffold0029 (176-220)||(139085-139129)
[»] scaffold0002 (1 HSPs)
scaffold0002 (176-220)||(316551-316595)
[»] scaffold0262 (1 HSPs)
scaffold0262 (182-221)||(22387-22426)
[»] chr8 (1 HSPs)
chr8 (253-287)||(14774381-14774415)
[»] chr1 (1 HSPs)
chr1 (176-221)||(14856846-14856891)
[»] scaffold0118 (2 HSPs)
scaffold0118 (185-221)||(22296-22332)
scaffold0118 (185-221)||(25248-25284)
[»] chr7 (3 HSPs)
chr7 (193-237)||(17501878-17501922)
chr7 (193-237)||(17551292-17551336)
chr7 (185-221)||(42235409-42235445)
[»] chr4 (1 HSPs)
chr4 (185-221)||(55555861-55555897)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 73 - 289
Target Start/End: Original strand, 24197358 - 24197577
Alignment:
Q  73 gcacaagaatgtttgttttagtctatgacaccacgtgtcataaccaagttgtgagaggagtatataatataggctagaacacccattgtactctctaa-- 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||      
T  24197358 gcacaagaatgtttgttttagtctatgacaccacgtgtcataaccaagttctaagaggagtatataatataggctagaacacccattgtactctctaatt 24197457  T
Q  171 --gtaccattttacttattaaaattcaaacatttaaatgttcaattgtcattcccttttattttgataatacnnnnnnnnattatgatttaatgcgcact 268  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        |||||||||||||| |||||    
T  24197458 atgtaccattttacttattaaaattcaaacatttaaatgttcaattgtcattcccttttcttttgataatac-tttttttattatgatttaatgtgcact 24197556  T
Q  269 atgattatagaaatcaattca 289  Q
    |||||||||||||||||||||    
T  24197557 atgattatagaaatcaattca 24197577  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 18859877 - 18859922
Alignment:
Q  176 attttacttattaaaattcaaacatttaaatgttcaattgtcattc 221  Q
    ||||| |||||||||| |||||||||||||| | ||||||||||||    
T  18859877 attttccttattaaaactcaaacatttaaatatccaattgtcattc 18859922  T

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Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 90 - 311
Target Start/End: Original strand, 47697454 - 47697678
Alignment:
Q  90 ttagtctatgacaccacgtgtcataaccaagttgtgagaggagtatataatataggctagaacacccattgtactctctaa----gtaccattttactta 185  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||    |||||||||||||||    
T  47697454 ttagtctatgacaccacgtgtcataaccaagttctgagaggagtgtataatataggctagaatacccattgtactctctaattatgtaccattttactta 47697553  T
Q  186 ttaaaattcaaacatttaaatgttcaattgtcattcccttttattttgataatacnnnnnnnnattatgatttaatgcgcactatgattatagaaatcaa 285  Q
    ||||||||||||||||||||||||||||||||||||| | || ||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  47697554 ttaaaattcaaacatttaaatgttcaattgtcattccttgttcttttgataatac-attttttattatgatttaatgcgcactatgattatagaaatcaa 47697652  T
Q  286 ttcannnnnnnaatgatattcttaat 311  Q
    ||||       |||||||||||||||    
T  47697653 ttcatttttttaatgatattcttaat 47697678  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 15324612 - 15324578
Alignment:
Q  253 tgatttaatgcgcactatgattatagaaatcaatt 287  Q
    ||||||||||||||| |||||||||||||||||||    
T  15324612 tgatttaatgcgcaccatgattatagaaatcaatt 15324578  T

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Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 152 - 289
Target Start/End: Original strand, 43449223 - 43449364
Alignment:
Q  152 cacccattgtactctctaa----gtaccattttacttattaaaattcaaacatttaaatgttcaattgtcattcccttttattttgataatacnnnnnnn 247  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||           
T  43449223 cacccattgtactctctaattatgtaccattttacttattaaaattcaaacatttaaatgttcaattgtcattcccttttcttttgataatacttttttt 43449322  T
Q  248 nattatgatttaatgcgcactatgattatagaaatcaattca 289  Q
     |||||||||||||||||||||||||||||| ||||||||||    
T  43449323 tattatgatttaatgcgcactatgattatagcaatcaattca 43449364  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 10028400 - 10028436
Alignment:
Q  185 attaaaattcaaacatttaaatgttcaattgtcattc 221  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  10028400 attaaaactcaaacatttaaatattcaattgtcattc 10028436  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 30343169 - 30343133
Alignment:
Q  185 attaaaattcaaacatttaaatgttcaattgtcattc 221  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  30343169 attaaaactcaaacatttaaatattcaattgtcattc 30343133  T

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Target: scaffold0225 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 11149 - 11104
Alignment:
Q  176 attttacttattaaaattcaaacatttaaatgttcaattgtcattc 221  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||    
T  11149 attttccttattaaaactcaaacatttaaattttcaattgtcattc 11104  T

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Target: scaffold0029 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 139129 - 139085
Alignment:
Q  176 attttacttattaaaattcaaacatttaaatgttcaattgtcatt 220  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||    
T  139129 attttccttattaaaactcaaacatttaaatattcaattgtcatt 139085  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 316595 - 316551
Alignment:
Q  176 attttacttattaaaattcaaacatttaaatgttcaattgtcatt 220  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||    
T  316595 attttccttattaaaactcaaacatttaaatattcaattgtcatt 316551  T

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Target: scaffold0262 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 22387 - 22426
Alignment:
Q  182 cttattaaaattcaaacatttaaatgttcaattgtcattc 221  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  22387 cttattaaaaatcaaacatttaaatattcaattgtcattc 22426  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 14774381 - 14774415
Alignment:
Q  253 tgatttaatgcgcactatgattatagaaatcaatt 287  Q
    ||||||||||||||| |||||||||||||||||||    
T  14774381 tgatttaatgcgcaccatgattatagaaatcaatt 14774415  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 14856846 - 14856891
Alignment:
Q  176 attttacttattaaaattcaaacatttaaatgttcaattgtcattc 221  Q
    ||||| |||||||||| |||||||||||||| | ||||||||||||    
T  14856846 attttccttattaaaactcaaacatttaaatatccaattgtcattc 14856891  T

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Target: scaffold0118 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 22332 - 22296
Alignment:
Q  185 attaaaattcaaacatttaaatgttcaattgtcattc 221  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  22332 attaaaactcaaacatttaaatattcaattgtcattc 22296  T

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Target: scaffold0118; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 25284 - 25248
Alignment:
Q  185 attaaaattcaaacatttaaatgttcaattgtcattc 221  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  25284 attaaaactcaaacatttaaatattcaattgtcattc 25248  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 17501922 - 17501878
Alignment:
Q  193 tcaaacatttaaatgttcaattgtcattcccttttattttgataa 237  Q
    |||||||||||||| |  |||||||||||| ||||||||||||||    
T  17501922 tcaaacatttaaatatctaattgtcattcctttttattttgataa 17501878  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 17551292 - 17551336
Alignment:
Q  193 tcaaacatttaaatgttcaattgtcattcccttttattttgataa 237  Q
    |||||||||||||| |  |||||||||||| ||||||||||||||    
T  17551292 tcaaacatttaaatatctaattgtcattcctttttattttgataa 17551336  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 42235409 - 42235445
Alignment:
Q  185 attaaaattcaaacatttaaatgttcaattgtcattc 221  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  42235409 attaaaactcaaacatttaaatattcaattgtcattc 42235445  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 55555897 - 55555861
Alignment:
Q  185 attaaaattcaaacatttaaatgttcaattgtcattc 221  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  55555897 attaaaactcaaacatttaaatattcaattgtcattc 55555861  T

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