View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4632-Insertion-6 (Length: 339)
Name: NF4632-Insertion-6
Description: NF4632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4632-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 11300006 - 11300335
Alignment:
| Q |
8 |
taatattcataggaatcatttacttaattaaccnnnnnnnnattaatgcgcaggggtcctggatcatggtttttgaatctcatctgtaagaagctacacc |
107 |
Q |
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| T |
11300006 |
taatattcatagaaatcatttacttaattaaccttttttttattaatgcgcaggggtcctggatcatggtttttgaatctcatctgtgagaggctacacc |
11300105 |
T |
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| Q |
108 |
tagaccgcgcaattctaatgtcatatttcacaggtattttaattatatattgttatgctgagggaattttacttaatttttgtgtatttttacaaaaaat |
207 |
Q |
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| T |
11300106 |
tagaccgcgcaattctaatgtcatatttcacaggtattttaattagatattgttatgatgagggaattttacttaacttttgtgtatttttacaaaaaat |
11300205 |
T |
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| Q |
208 |
acataaaaagtaatagaaatttccttaagttatatgtatcaacaaatttcattaccgcaattattgattttactttgggattccttttcttttattgact |
307 |
Q |
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| T |
11300206 |
acataaaaagtaatagaaatttcctcaagttttatgtatcaacaaatttcattaccgcaattattgattttactttgggattccttttcttttattgact |
11300305 |
T |
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| Q |
308 |
tcattattttgataaaccttaattaccttt |
337 |
Q |
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| T |
11300306 |
tcattattttgctaaaccttaattaacttt |
11300335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 172 - 339
Target Start/End: Original strand, 11294291 - 11294459
Alignment:
| Q |
172 |
aattttacttaatttttgtgtatttttacaaaaaatacataaaaagt-aatagaaatttccttaagttatatgtatcaacaaatttcattaccgcaatta |
270 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||| | ||||||| |||||||||||| |||| ||||||||||| ||| | ||||||| |
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| T |
11294291 |
aattttccttaatttttgtgtatttttctaaaaaatacataaaaaattaatagaattttccttaagttttatgaatcaacaaattagattgctgcaatta |
11294390 |
T |
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| Q |
271 |
ttgattttactttgggattccttttcttttattgacttcattattttgataaaccttaattacctttca |
339 |
Q |
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| T |
11294391 |
ttgattttattttgggattcttattttttattttattttattattttgataatccttaattacctttca |
11294459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 11294185 - 11294290
Alignment:
| Q |
49 |
attaatgcgcaggggtcctggatcatggtttttgaatctcatctgtaagaagctacacctagaccgcgcaattctaatgtcatatttcacaggtatttta |
148 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||| || |||| |||||||| | | || |||| ||||| ||||||||||| |||| |
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| T |
11294185 |
attaatgaacaggggtcctggatcagatcttttgaatctcatctgtgtgaggctaaacctagactgtgtaaatctactgtcaattttcacaggtacttta |
11294284 |
T |
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| Q |
149 |
attata |
154 |
Q |
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|||||| |
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| T |
11294285 |
attata |
11294290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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