View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4632_high_1 (Length: 1095)
Name: NF4632_high_1
Description: NF4632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4632_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 598 - 1066
Target Start/End: Complemental strand, 5219382 - 5218914
Alignment:
| Q |
598 |
tcagtgcattatagcataataacaaggatacataaaaggaaaatcttaatgctaggttttataggacttacatgcgacactctacgctctattgcagcta |
697 |
Q |
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| T |
5219382 |
tcagtgcattatagcataataacaaggatacataaaaggaaaatcttaatgctaggttttataggacttacatgcgacactctacgctctattgcagcta |
5219283 |
T |
|
| Q |
698 |
ttatgcataagataagcttttccctctcactttgggttctgagagctaaaccattccacttgtgccttatatagtactcctgcaagacacggatcaatgt |
797 |
Q |
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| T |
5219282 |
ttatgcataagataagcttttccctctcactttgggttctgagagctaaaccattccacttgtgccttatatagtactcctgcaagacacggatcaatgt |
5219183 |
T |
|
| Q |
798 |
aattaatgacggattcattgtatattatagtttgacttcaactcaactttattataaaatcaacttgtaaagtgacgatgaagtacctgatcggctatgg |
897 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5219182 |
aattaatgacggattcatcgtatattatagtttgacttcaactcaactttattataaaatcaacttgtaaagtgacgatgaagtacctgatcggctatgg |
5219083 |
T |
|
| Q |
898 |
atttcttggaactaatggcagcatgaaagactacatactgcatgtccctaagcacacacaccgtatcaaaaaacaacttgggacggtccctacacaccaa |
997 |
Q |
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| T |
5219082 |
atttcttggaactaatggcggcatgaaagactacatactgcatgtccctaagcacacacaccgtatcaaaaaacaacttgggacggtccctacacaccaa |
5218983 |
T |
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| Q |
998 |
gttcaccacccaataccccctgtccttgcatctactaatagacacatgagtcccatcacaccccttttt |
1066 |
Q |
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| T |
5218982 |
gttcaccacccaataccccctgtccttgcatctactaatagacacatgagtcccatcacaccccttttt |
5218914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Complemental strand, 42029028 - 42028479
Alignment:
| Q |
1 |
acaagttcattaaataatcttggcatatatcgaattaagcaccttgacctatactactatatatttagaacaaatcacaaatgaattattgatgacacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42029028 |
acaagttcattaaataatcttggcatatatcgaattaagcaccttgacctatactactatatatttagaacaaatcacaaatgaattaatgatgacacta |
42028929 |
T |
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| Q |
101 |
ttgnnnnnnnnnnnnnn-gggatgagggaatcccagaagctagtttacaagagcgtagagatgatgaagtggtttct-gatcggatctcccttcaaatca |
198 |
Q |
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| T |
42028928 |
ttgttttttttcttttttgggataagggaatcccagaagctaggttacaagagcatagagatgatgaagtggtttcttgatcggatctcccttcaaatca |
42028829 |
T |
|
| Q |
199 |
atatatggatcatgaaaacagttgacaagcatcaatttcaccaaaatttaaaatgtgaaaagattctaattttctaagtttgtggagtaagctattataa |
298 |
Q |
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| T |
42028828 |
atatatggatcatgaaaacagttgacaagcatcaatttcaccaaaatttaaaatgtgaaaagattctaattttctaagtttgtggagtaagctattataa |
42028729 |
T |
|
| Q |
299 |
ttaggtaagtgnnnnnnnnn-tagaaatatagtaaaggacaaaggtggtaaggaggaggaagaggaaagtctgcacactgagatgttttttactgactta |
397 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42028728 |
ttaggtaagtgaaaaaaaaaatagaaatatagtaaaggacaaaggtggtaaggaggaggaagaggaaagtctgcacactgagatgttttttactgactta |
42028629 |
T |
|
| Q |
398 |
aatgcgtatcagaactgtgttagggcagcgagagggagttgtcaaatcaagaaaagtaaaacttgcatgtttatctctttttcataaataataatattat |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42028628 |
aatgcgtatcagaactgtgttagggcagcgagagggagttgtcaaatcaagaaaagtaaaacttgcatgtttatctctttttcataaataataatattat |
42028529 |
T |
|
| Q |
498 |
atggtgttatggagaagctattatggagtttctatagttgcactgactgt |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42028528 |
atggtgttatggagaagctattatggagtttctatagttgcactgactgt |
42028479 |
T |
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