View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4632_high_3 (Length: 342)
Name: NF4632_high_3
Description: NF4632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4632_high_3 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 342
Target Start/End: Original strand, 10131856 - 10132189
Alignment:
| Q |
9 |
agaagcagagacatcagacaccacaacttgttggcgcatgtagttcactatagcctctttaatttgatcgaaagatatctccaactaagagattctttgt |
108 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10131856 |
agaagcatcgacatcagacaccacagcttgttggcgcatgtagttcactatagcctctttaatttgatccaaagatatctccaactaagagattctttgt |
10131955 |
T |
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| Q |
109 |
tcgacttccgtctcacatgttgacaaatttttcaaaactatatgtaaaatacatgtaagaaagaatcttacttataaactatatggatttacattacaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10131956 |
tcgacttccgtctcacatgttgacaaatttttcaaaactatatgtaaaatacatgtaagaaagagtcttacttataaactatatggatttacattacaaa |
10132055 |
T |
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| Q |
209 |
ttatcgaagttttcttgatcaagactccagtcatcaaaaatttcttttcccatattcaaattcatatttatgtcttgttctgtctacaagttcattcaat |
308 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10132056 |
ttatcgaagttttcttgatcaagactccaatcataaaaaatttcttttcccttattcaaattcatatttatgtcttgttctgtctacaagttcattcaat |
10132155 |
T |
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| Q |
309 |
caaacaaatgacttacatgcttagacacaaaggt |
342 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
10132156 |
caaacaaatgacttacatgcttagacacaaaggt |
10132189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 342
Target Start/End: Complemental strand, 10358365 - 10358032
Alignment:
| Q |
9 |
agaagcagagacatcagacaccacaacttgttggcgcatgtagttcactatagcctctttaatttgatcgaaagatatctccaactaagagattctttgt |
108 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10358365 |
agaagcattgacttcagacaccacaacttgttggcgcatgtagttcactatagcctctttaatttgatccaaagatatctccaactaagagattctttgt |
10358266 |
T |
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| Q |
109 |
tcgacttccgtctcacatgttgacaaatttttcaaaactatatgtaaaatacatgtaagaaagaatcttacttataaactatatggatttacattacaaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10358265 |
tcgacttccgtctcacatgttgacaaatttttcaaaactatatgtaaaatatatgtaagaaagagtcttacttataaactatatggatttacattacaaa |
10358166 |
T |
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| Q |
209 |
ttatcgaagttttcttgatcaagactccagtcatcaaaaatttcttttcccatattcaaattcatatttatgtcttgttctgtctacaagttcattcaat |
308 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10358165 |
ttatcgaagttttcttgatcaagactccaatcatcaaaaatttcttttcccttattcaaattcatatttatgtcttgttctgtctacaagttcattcaat |
10358066 |
T |
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| Q |
309 |
caaacaaatgacttacatgcttagacacaaaggt |
342 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
10358065 |
caaacaaatgacttacatgcttagacacaaaggt |
10358032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 214 - 340
Target Start/End: Original strand, 10101022 - 10101148
Alignment:
| Q |
214 |
gaagttttcttgatcaagactccagtcatcaaaaatttcttttcccatattcaaattcatatttatgtcttgttctgtctacaagttcattcaatcaaac |
313 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10101022 |
gaagttttcttgatcaggactccagtcatcaaaaatttcttttcccttattcaaattcatatttatgtcttgttctgtctacaagttcattcaatcaaac |
10101121 |
T |
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| Q |
314 |
aaatgacttacatgcttagacacaaag |
340 |
Q |
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| T |
10101122 |
aaatgacttacatgcttagacacaaag |
10101148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 214 - 340
Target Start/End: Original strand, 10211947 - 10212073
Alignment:
| Q |
214 |
gaagttttcttgatcaagactccagtcatcaaaaatttcttttcccatattcaaattcatatttatgtcttgttctgtctacaagttcattcaatcaaac |
313 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10211947 |
gaagttttcttgatcaggactccagtcatcaaaaatttcttttcccttattcaaattcatatttatgtcttgttctgtctacaagttcattcaatcaaac |
10212046 |
T |
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| Q |
314 |
aaatgacttacatgcttagacacaaag |
340 |
Q |
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||||||||||||||||||||||||||| |
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| T |
10212047 |
aaatgacttacatgcttagacacaaag |
10212073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 10100786 - 10100972
Alignment:
| Q |
18 |
gacatcagacaccacaacttgttggcgcatgtagttcactatagcctctttaatttgatcgaaagatatctccaactaagagattctttgttcgacttcc |
117 |
Q |
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||||||| ||||||||||||||| |||||||||||||| || |||||||| ||||| ||| |||||| | || ||| |||||||||| |||| |
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| T |
10100786 |
gacatcaaacaccacaacttgttagcgcatgtagttca-tagagcctcttcaatttcatccaaagatctttctaac------attctttgtttgactagg |
10100878 |
T |
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| Q |
118 |
gtctcacatgttgacaaatttttcaaaactatatgtaaaatacatgtaagaaagaatcttacttataaactatatggatttacattacaaatta |
211 |
Q |
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||||||||||| |||||||| |||||||||||| |||||||||||||||||| | || ||||||||||||||| | | |||||| |||||| |
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| T |
10100879 |
aactcacatgttggcaaattttcaaaaactatatgtgaaatacatgtaagaaagagtattgcttataaactatatgaactgacattataaatta |
10100972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 10211806 - 10211897
Alignment:
| Q |
120 |
ctcacatgttgacaaatttttcaaaactatatgtaaaatacatgtaagaaagaatcttacttataaactatatggatttacattacaaatta |
211 |
Q |
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||||||||||| |||||||| |||||||||||| |||||||||||||||||| | || ||||||||||||||| | | |||||| |||||| |
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| T |
10211806 |
ctcacatgttggcaaattttcaaaaactatatgtgaaatacatgtaagaaagagtattgcttataaactatatgaactgacattataaatta |
10211897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 10208695 - 10208760
Alignment:
| Q |
18 |
gacatcagacaccacaacttgttggcgcatgtagttcactatagcctctttaatttgatcgaaagat |
84 |
Q |
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||||||| ||||||||||||||| |||||||||||||| || |||||||| ||||| ||| |||||| |
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| T |
10208695 |
gacatcaaacaccacaacttgttagcgcatgtagttca-tagagcctcttcaatttcatccaaagat |
10208760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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