View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4632_high_4 (Length: 337)
Name: NF4632_high_4
Description: NF4632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4632_high_4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 78 - 337
Target Start/End: Original strand, 23700751 - 23701010
Alignment:
| Q |
78 |
ttccacatagaagccacacttaggacatcttttccatctcttgttcttagcaagttccatggccattagatcttccctccctcactcgccgactttcaag |
177 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||| |
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| T |
23700751 |
ttccacatagaagccacactttggacatcttttccatctcttgttctttgcaagttccatggccattagatcttccatccctcgctcgccgtctttcaag |
23700850 |
T |
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| Q |
178 |
ctttgaaactctttacaaccaacacctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattc |
277 |
Q |
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| T |
23700851 |
ctttgaaacactttacaatcaacacctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattc |
23700950 |
T |
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| Q |
278 |
ccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtg |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23700951 |
ccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtg |
23701010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 78 - 337
Target Start/End: Complemental strand, 23695050 - 23694791
Alignment:
| Q |
78 |
ttccacatagaagccacacttaggacatcttttccatctcttgttcttagcaagttccatggccattagatcttccctccctcactcgccgactttcaag |
177 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| |
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| T |
23695050 |
ttccacatagaagccacactttggacatcttttccatctcttgttcttagcaagttccatggccattagatcttccctccctcgctcaccatctttcaag |
23694951 |
T |
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| Q |
178 |
ctttgaaactctttacaaccaacacctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattc |
277 |
Q |
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| T |
23694950 |
cttagaaactctttacaatcaacacctatgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattc |
23694851 |
T |
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| Q |
278 |
ccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtg |
337 |
Q |
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| T |
23694850 |
ccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtg |
23694791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 79 - 337
Target Start/End: Complemental strand, 23697180 - 23696922
Alignment:
| Q |
79 |
tccacatagaagccacacttaggacatcttttccatctcttgttcttagcaagttccatggccattagatcttccctccctcactcgccgactttcaagc |
178 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||| |
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| T |
23697180 |
tccacatagaagctgcactttggacatcttttccatctcttgttcttagcaagttccatggccattagatctttcctccctcgctcgccatcttccaagc |
23697081 |
T |
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| Q |
179 |
tttgaaactctttacaaccaacacctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcc |
278 |
Q |
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| T |
23697080 |
tttgaaactctctacaatcaacaccagagtgccatgaaaccttacattgtgcacaaaataatctattacaatgaggacactcagaaacggttacaacttc |
23696981 |
T |
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| Q |
279 |
cttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtg |
337 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||| || ||||| |||| |
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| T |
23696980 |
ctcttcatcattcaccaacatagctgaacaatcattaaaaggacagtacaatttttgtg |
23696922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 334
Target Start/End: Original strand, 8148913 - 8149150
Alignment:
| Q |
100 |
ggacatcttttccatctcttgttcttagcaagttccatggccattagatcttc--cctccctc--actcgccgactttcaagctttgaaactctttacaa |
195 |
Q |
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| T |
8148913 |
ggacaccttttccatttctttttcttagcaagttccagagccattagatctaaatccttcctcggac-cgccttttttcaaaatttgaaactctctacaa |
8149011 |
T |
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| Q |
196 |
ccaacacctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaaca |
295 |
Q |
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| || | |||||||||| ||| | ||||||||| ||||| | ||||||||||||||||||||||| | |||||| | | ||| ||||||||| || |
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| T |
8149012 |
tcgacttccgtgtgccatggaacttgacattgtgcgcagaatagtctatgacaatgtggacattccgtaattctcacaacttcatttccatcattcacca |
8149111 |
T |
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| Q |
296 |
acatagctgaacaatcattaaaaggacaataaaatttct |
334 |
Q |
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| T |
8149112 |
acatagctgaacaatccttaaaaggacaataaattttct |
8149150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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