View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4632_high_5 (Length: 324)
Name: NF4632_high_5
Description: NF4632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4632_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 2 - 318
Target Start/End: Complemental strand, 5369832 - 5369516
Alignment:
| Q |
2 |
attgaaaataattaatttcatatgcatatcgacccaaaaacagttacattcacgtttgcgtgctaatatttgtgatcagtatcttcaaaattcaaatgat |
101 |
Q |
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| T |
5369832 |
attgaaaataattaatttcatatgcatatcgacccaaaaacagttacattcacgtttgcgtgctaatatttgtgatcagtatcttcaaaattcaaatgat |
5369733 |
T |
|
| Q |
102 |
acaattagaggcagaggatgaccctatcgtttgatacaagacaacgggtattttcatcaaccnnnnnnnnnnnnnngatacaagaaagaaaggtgacgtt |
201 |
Q |
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| T |
5369732 |
acaattagaggcagagggtgaccctatcgtttgatacaagacaacgggtattttcatcaaccaaaaattaaaaaaagatacaagaaagaaaggagacgtt |
5369633 |
T |
|
| Q |
202 |
gtgacaagaaagaaacacctcacatgcatctttgaattaattatgatcaaataggtgttaatcaaacagattattgattatattataatatatcataaat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5369632 |
gtgacaagaaagaaacacctcacatgcatctttgaattaattatgatcaaataggtgttaatcaaacagattattgattatattataatatataataaat |
5369533 |
T |
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| Q |
302 |
taaataacaacaccaaa |
318 |
Q |
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|||||||||||| |||| |
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| T |
5369532 |
taaataacaacatcaaa |
5369516 |
T |
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