View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4632_high_6 (Length: 317)
Name: NF4632_high_6
Description: NF4632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4632_high_6 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 6 - 317
Target Start/End: Original strand, 2362016 - 2362327
Alignment:
| Q |
6 |
gaggagcagagaggggacagaaggtacgnnnnnnngtgagtgagacttgtgaactgtgtgggggcagataagaatgctttgaaattttaacgaaagttca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2362016 |
gaggagcagagaggggacagaaggtacgaaaaaaagtgagtgagacttgtgaactgtgtgggggcagataagaatgctttcaaattttaacgaaagttca |
2362115 |
T |
|
| Q |
106 |
tgggtgaagaaaattttgaaaataaaacagtaacaaacgttgtttttaatgaataattgtgtctttttctnnnnnnnnnnnnnnccatgaattttttatg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2362116 |
tgggtgaagaaaattttgaaaataaaacagtaacaaacgttgtttttaatgaataattgtgtctttttctaaaaatgaaaaaaaccatgaattttttatg |
2362215 |
T |
|
| Q |
206 |
tgctgtgctggggactcactgccacactactcagtcctttgcaccgtactagnnnnnnnnccctttgaatggctatgaaatggt--aaaaaataacggca |
303 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2362216 |
tgctgtgctggggactcactgc--cactactcagtcctttgcaccgtactagttttttttccctttgaatggctatgaaatggtaaaaaaaataacggca |
2362313 |
T |
|
| Q |
304 |
atagtactgataag |
317 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2362314 |
atagtactgataag |
2362327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University