View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4633-Insertion-11 (Length: 439)

Name: NF4633-Insertion-11
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4633-Insertion-11
NF4633-Insertion-11
[»] chr1 (3 HSPs)
chr1 (7-439)||(39288827-39289261)
chr1 (383-418)||(46548001-46548036)
chr1 (366-408)||(5167381-5167423)
[»] chr7 (2 HSPs)
chr7 (7-140)||(43961766-43961908)
chr7 (205-274)||(43961910-43961979)
[»] chr4 (3 HSPs)
chr4 (379-419)||(39438915-39438955)
chr4 (366-419)||(22683989-22684042)
chr4 (366-410)||(17897801-17897845)
[»] chr6 (2 HSPs)
chr6 (384-419)||(2234142-2234177)
chr6 (366-406)||(2234671-2234711)
[»] chr8 (2 HSPs)
chr8 (386-419)||(2778340-2778373)
chr8 (366-419)||(36794941-36794994)
[»] chr5 (2 HSPs)
chr5 (366-395)||(10957178-10957207)
chr5 (378-406)||(9449150-9449178)
[»] chr3 (1 HSPs)
chr3 (366-411)||(31012862-31012907)
[»] chr2 (2 HSPs)
chr2 (379-411)||(15881271-15881303)
chr2 (366-417)||(37561814-37561866)


Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 7 - 439
Target Start/End: Original strand, 39288827 - 39289261
Alignment:
Q  7 agaaacaatcggaaggaatcgctttgttatccatgtacaacgacaacagcgacgacgatatggaagacgctgaagaagtgaatcgccaggaggagcaaga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39288827 agaaacaatcggaaggaatcgctttgttatccatgtacaacgacaacagcgacgacgatatggaagacgctgaagaagtgaatcgccagggggagcaaga 39288926  T
Q  107 tgacgccgctgaacacgcggcggaggaagatttgactgccgatacgcatagaatgaccgttactgattccggaaacgaagttaccggcgagggttttact 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39288927 tgacgccgctgaacacgcggcggaggaagatttgactgccgatacgtatagaatgaccgttactgattccggaaacgaagttaccggcgagggttttact 39289026  T
Q  207 ccgaatagattgttttctccggtgcaagagcaacgacgtgtggaattgaagattagtaagagtgccacgcttacgatagttgattatggtcatgatgaag 306  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39289027 ccgaatagattgttttctccggtgcaagagcaacaacgggtggaattgaagattagtaagagtgccacgcttacgatagttgattatggtcatgatgaag 39289126  T
Q  307 tagcaatgtcacctgaacctgaggtag--nnnnnnnnnnncctttctcatagagcactctctttggttctgctgtgataaaaattgattttgaatcaatt 404  Q
    |||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39289127 tagcaatgtcacctgaacctgaggtagtttttttttcttccctttctcatagagcactctctttggttctgctgtgataaaaattgattttgaatcaatt 39289226  T
Q  405 gattttacttaaaagaaagttagtatgaaatggta 439  Q
    ||||||||||||||| |||||||||||||||||||    
T  39289227 gattttacttaaaagtaagttagtatgaaatggta 39289261  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 46548001 - 46548036
Alignment:
Q  383 aaaaattgattttgaatcaattgattttacttaaaa 418  Q
    ||||||||||||||||| ||||||||||||||||||    
T  46548001 aaaaattgattttgaattaattgattttacttaaaa 46548036  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 408
Target Start/End: Complemental strand, 5167423 - 5167381
Alignment:
Q  366 tttggttctgctgtgataaaaattgattttgaatcaattgatt 408  Q
    ||||||||||| ||||| |||||||||||||||| ||||||||    
T  5167423 tttggttctgcggtgatgaaaattgattttgaatgaattgatt 5167381  T

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Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 43961766 - 43961908
Alignment:
Q  7 agaaacaatcggaaggaatcgctttgttatccatgtacaacgacaacagcgacgacgatatggaagacgctgaagaa---------gtgaatcgccagga 97  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||         |||||||||  | |    
T  43961766 agaaacagtcggaaggaatcactttgttatccatgtacaacgacaacaacgacgatgatatggaagacgccgaagaagaagaagacgtgaatcgcgggaa 43961865  T
Q  98 ggagcaagatgacgccgctgaacacgcggcggaggaagatttg 140  Q
    |||||||| ||| | |||||||||  |||||||||||||||||    
T  43961866 ggagcaagttgatgtcgctgaacaaacggcggaggaagatttg 43961908  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 43961910 - 43961979
Alignment:
Q  205 ctccgaatagattgttttctccggtgcaagagcaacgacgtgtggaattgaagattagtaagagtgccac 274  Q
    |||| ||||| |||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||||||    
T  43961910 ctccaaataggttgttttcgccggttcaagagcaacaacgcgtggaattgaagattagtaagagtgccac 43961979  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 39438955 - 39438915
Alignment:
Q  379 tgataaaaattgattttgaatcaattgattttacttaaaag 419  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  39438955 tgataaaaattgattttgaatgaattaattttacttaaaag 39438915  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 22684042 - 22683989
Alignment:
Q  366 tttggttctgctgtgataaaaattgattttgaatcaattgattttacttaaaag 419  Q
    ||||||||||| |||| |||||| ||||||  || |||||||||||||||||||    
T  22684042 tttggttctgcagtgacaaaaatagattttagatgaattgattttacttaaaag 22683989  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 17897801 - 17897845
Alignment:
Q  366 tttggttctgctgtgataaaaattgattttgaatcaattgatttt 410  Q
    ||||||||||| |||| ||||||||||||||| | ||||||||||    
T  17897801 tttggttctgcggtgacaaaaattgattttgagtgaattgatttt 17897845  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 419
Target Start/End: Original strand, 2234142 - 2234177
Alignment:
Q  384 aaaattgattttgaatcaattgattttacttaaaag 419  Q
    |||||||||||||||| |||||||||||||||||||    
T  2234142 aaaattgattttgaatgaattgattttacttaaaag 2234177  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 2234711 - 2234671
Alignment:
Q  366 tttggttctgctgtgataaaaattgattttgaatcaattga 406  Q
    |||||||||||| |||||||||||| |||||| ||||||||    
T  2234711 tttggttctgctttgataaaaattgcttttgagtcaattga 2234671  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 2778340 - 2778373
Alignment:
Q  386 aattgattttgaatcaattgattttacttaaaag 419  Q
    |||||||||||||| |||||||||||||||||||    
T  2778340 aattgattttgaataaattgattttacttaaaag 2778373  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 36794994 - 36794941
Alignment:
Q  366 tttggttctgctgtgataaaaattgattttgaatcaattgattttacttaaaag 419  Q
    ||||||||||| || | |||||||||||||||||  || |||||||||||||||    
T  36794994 tttggttctgcggtcacaaaaattgattttgaattgatagattttacttaaaag 36794941  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 395
Target Start/End: Original strand, 10957178 - 10957207
Alignment:
Q  366 tttggttctgctgtgataaaaattgatttt 395  Q
    ||||||||||||||||||||||||||||||    
T  10957178 tttggttctgctgtgataaaaattgatttt 10957207  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Original strand, 9449150 - 9449178
Alignment:
Q  378 gtgataaaaattgattttgaatcaattga 406  Q
    |||||||||||||||||||||||||||||    
T  9449150 gtgataaaaattgattttgaatcaattga 9449178  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 31012862 - 31012907
Alignment:
Q  366 tttggttctgctgtgataaaaattgattttgaatcaattgatttta 411  Q
    ||||| ||||| |||| ||||||||||||||||| |||||||||||    
T  31012862 tttggatctgcagtgaaaaaaattgattttgaatgaattgatttta 31012907  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 15881303 - 15881271
Alignment:
Q  379 tgataaaaattgattttgaatcaattgatttta 411  Q
    ||||||||||||||||||||| |||||||||||    
T  15881303 tgataaaaattgattttgaatgaattgatttta 15881271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 37561866 - 37561814
Alignment:
Q  366 tttggttctgctgtgataaaaa-ttgattttgaatcaattgattttacttaaa 417  Q
    ||||||||||| |||||||||| ||||||||||||  |||||||||| |||||    
T  37561866 tttggttctgcggtgataaaaacttgattttgaatgtattgattttagttaaa 37561814  T

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