View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4633-Insertion-12 (Length: 252)
Name: NF4633-Insertion-12
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4633-Insertion-12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 12268415 - 12268659
Alignment:
| Q |
8 |
tttgcttctgggtttcgatcacaattgagtgaggagaagaaggtggaagtgagagaaatttaaagagttagaaaattggaatgtaatttaaaaggaaaat |
107 |
Q |
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| T |
12268415 |
tttgcttctggggttcgatcacaatcgagtgagaagaagaaggtggaagtgagagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaat |
12268514 |
T |
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| Q |
108 |
tataaagcactaataacaaaaagattgttacaacttacaaagtatgaaacacattttggaaatgttacaaaatcaccatagcagtaacaatttaacaaat |
207 |
Q |
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| T |
12268515 |
tataaagcactaataacaaaaagattgttacaacgtacaaagtatgaaacacattttggaaatgttacaaaatcaccatatcagtaacaatttaacaaat |
12268614 |
T |
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| Q |
208 |
gttacaaggtgagtgagtgagtgttactaaaagtcacaaatgcag |
252 |
Q |
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| T |
12268615 |
gttacaaggtgagtgagtgagtgttactaaaagtcacaaatgcag |
12268659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 17032022 - 17032100
Alignment:
| Q |
60 |
gagaaatttaaagagttagaaaattggaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
140 |
Q |
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| T |
17032022 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17032100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 17562458 - 17562536
Alignment:
| Q |
60 |
gagaaatttaaagagttagaaaattggaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
140 |
Q |
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| T |
17562458 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17562536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 17030627 - 17030575
Alignment:
| Q |
78 |
gaaaattggaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
131 |
Q |
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| T |
17030627 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17030575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 17561063 - 17561011
Alignment:
| Q |
78 |
gaaaattggaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
131 |
Q |
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| T |
17561063 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17561011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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