View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4633-Insertion-13 (Length: 180)
Name: NF4633-Insertion-13
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4633-Insertion-13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 21513799 - 21513912
Alignment:
| Q |
66 |
ccacaaatcccaattcaacctacatgcatacattgcaatacaatccaatccaacccaacaacccaaaaactcttgttcacataaaaaatcactgtttctc |
165 |
Q |
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| T |
21513799 |
ccacaaatcccaattcaacctacatgcatacattgcaatacaatccaatccaacccaacaacccaaaaactcttgttcacat-aaaaatcattgtttctc |
21513897 |
T |
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| Q |
166 |
ttgaattccacaaac |
180 |
Q |
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| T |
21513898 |
ttgaattccacaaac |
21513912 |
T |
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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 21513736 - 21513776
Alignment:
| Q |
10 |
tatacatatacaacacgtagacacgcctaatccaagaagta |
50 |
Q |
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| T |
21513736 |
tatacatatacaacacatagacacgcctaatccaagaagta |
21513776 |
T |
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