View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4633-Insertion-15 (Length: 168)

Name: NF4633-Insertion-15
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4633-Insertion-15
NF4633-Insertion-15
[»] chr3 (6 HSPs)
chr3 (8-168)||(16051771-16051940)
chr3 (8-166)||(16056975-16057142)
chr3 (8-162)||(16061121-16061284)
chr3 (23-166)||(16035027-16035179)
chr3 (8-119)||(16045606-16045717)
chr3 (129-162)||(16045736-16045769)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 16051771 - 16051940
Alignment:
Q  8 catttatggtccaaagtgcagctactctcactatatcttctattatatgcttcttcctttgcaaaacgttagtactactgtttattaacaaaggtacctc 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16051771 catttatggtccaaagtgctgctactctcactatatcttctattatatgcttcttcctttgcaaaacgttagtactactgtttattaacaaaggtacctc 16051870  T
Q  108 ctcgctacaattcattag---------aaagcacaacatgaatttttgtagcaatttagttttatggcct 168  Q
    ||||||||||||||| ||          | |||||||||||||||| |||||||||||||||||||||||    
T  16051871 ctcgctacaattcatcagtttctaagccaggcacaacatgaattttggtagcaatttagttttatggcct 16051940  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 6e-45
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 16056975 - 16057142
Alignment:
Q  8 catttatggtccaaagtgcagctactctcactatatcttctattatatgcttcttcctttgcaaaacgttagtactactgtttattaacaaaggtacctc 107  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  16056975 cattgatggtccaaagtgctgctactctcactatatcttctattatatgcttctgcctttgcaaaatgttagtactactgtttattaacaaaggtacctc 16057074  T
Q  108 ctcgctacaattcattag---------aaagcacaacatgaatttttgtagcaatttagttttatggc 166  Q
    |||||| | ||| || ||          | ||||||||| ||||||||||||||||||||||||||||    
T  16057075 ctcgctgctatttatcagtttctaagccaggcacaacattaatttttgtagcaatttagttttatggc 16057142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 6e-45
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 16061121 - 16061284
Alignment:
Q  8 catttatggtccaaagtgcagctactctcactatatcttctattatatgcttcttcctttgcaaaacgttagtactactgtttattaacaaaggtacctc 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||    
T  16061121 catttatggtccaaagtgctgctactctcactatatcttctattatatgcttcttcctttgaaaaatgttagtacaactgtttattaacaaagttacctc 16061220  T
Q  108 ctcgctacaattcattaga---------aagcacaacatgaatttttgtagcaatttagtttta 162  Q
    |||||||||||| || ||          | ||| ||||||||||||||||||||||||||||||    
T  16061221 ctcgctacaatttatcagtttctaagccaggcataacatgaatttttgtagcaatttagtttta 16061284  T

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Target: chr3; HSP #4
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 16035027 - 16035179
Alignment:
Q  23 gtgcagctactctcactatatcttctattatatgcttcttcctttgcaaaacgttagtactactgtttattaacaaaggtacctcctcgctacaattcat 122  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  16035027 gtgctgctactctcactatatcttctattatatgcttctgcctttgcaaaacgttagtattactgtttattaacaaaggtacctcctcgctacaatttat 16035126  T
Q  123 tag---------aaagcacaacatgaatttttgtagcaatttagttttatggc 166  Q
     ||          | ||||||||| ||||||||||||||||||||||||||||    
T  16035127 cagtttctaagctaggcacaacattaatttttgtagcaatttagttttatggc 16035179  T

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Target: chr3; HSP #5
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 16045606 - 16045717
Alignment:
Q  8 catttatggtccaaagtgcagctactctcactatatcttctattatatgcttcttcctttgcaaaacgttagtactactgtttattaacaaaggtacctc 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||||| ||||||    
T  16045606 catttatggtccaaagtgctgctactctcactatatcttctattatatgcttcttcctttgaaaaacgttagtataattgtttattaacaaagttacctc 16045705  T
Q  108 ctcgctacaatt 119  Q
    ||||||||||||    
T  16045706 ctcgctacaatt 16045717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 16045736 - 16045769
Alignment:
Q  129 gcacaacatgaatttttgtagcaatttagtttta 162  Q
    ||| ||||||||||||||||||||||||||||||    
T  16045736 gcataacatgaatttttgtagcaatttagtttta 16045769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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