View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4633-Insertion-2 (Length: 1025)
Name: NF4633-Insertion-2
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4633-Insertion-2 |
 | |
|
| [»] scaffold0256 (4 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 830; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 830; E-Value: 0
Query Start/End: Original strand, 11 - 984
Target Start/End: Complemental strand, 16874137 - 16873148
Alignment:
| Q |
11 |
gaaagataagtaaataaagagttaattgttatgttaaataaacacatgcttagctaagcaacaatttacaaaagagatgtactcaattgaatatgatgat |
110 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16874137 |
gaaagataagaaaataaagagttaattgttacgttaaataaacgcatgcttagctaagcaacaaattacaaaagagatgtactcaattgaatatgatgat |
16874038 |
T |
|
| Q |
111 |
tcaaatgaaagaaaacttgagaattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16874037 |
tcaaatgaaagaaaacttgagaattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattttc |
16873938 |
T |
|
| Q |
211 |
acaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaaaccaaattttctgttcaaaactgatcaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16873937 |
acaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaaatcaaattttctgttcaaaactgatcaa |
16873838 |
T |
|
| Q |
311 |
ccatgtaaagagaaataatgtgcctaaactgcacttcagatcaacattgatttttaattatttctatgaaaaatcaaacaggaacttctttgaacagtga |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16873837 |
ccatgtaaagagaaataatgtgcctaaactgcacttcagatcaacattgatttttaattatttctatgaaaaagcaaacaggaacttctttgaacagtga |
16873738 |
T |
|
| Q |
411 |
cattggatatattaaaatgatatattactgaacgtcttatattgtaagcacatacatttgaaaaaagatgggatttagtacctgttctgaagtcttttta |
510 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16873737 |
cattggatctattaaaattatatattactgaacatcatatattgtaagcacatacattttaaaaaagatgggatttagtacctgttctgaagtcttttta |
16873638 |
T |
|
| Q |
511 |
tgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataaagttcagacagacagtcatgtgcttcagaaaccagcccag |
610 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16873637 |
tgataacgactccgcgcaactccttgtgcaagcaattctttcaaccttccaccgaaataaagttcagacagacagtcatgtgcttcagaaaccagcccag |
16873538 |
T |
|
| Q |
611 |
cacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtgttgaaacgtccatgtggtgaccattttcttgtaaatgactcgtaag |
710 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16873537 |
caggaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtgttgaaacgtccatgtggtgaccattttcttgtaaatgactcgtaag |
16873438 |
T |
|
| Q |
711 |
caacagatcacgggctttagtgaaatcatc---------atggtgatgtatatgacaaagcattgcaagtgctttatcacgctcgtctccatatttgtat |
801 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16873437 |
caacagatcacgggctttagtgaactcatcatgatgagaatggtgatgtatatgacaaagcattgcaagtgctttatcaggctcgtctccatatttgtat |
16873338 |
T |
|
| Q |
802 |
attagtaacactaatccatccattaaggtcctgctgttctccggctcaaccaatgttctcaatgcatcataaacctcttgaggtttgagttcaaccctca |
901 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16873337 |
attagtaacactaatccatccattaaggtcctgctgttctccggctcaaccaatgttctcaatgcatcataaacctcttgaggtttgagttcaaccctca |
16873238 |
T |
|
| Q |
902 |
tc-aggcaacctttaaagaacctttgaaatct-caaaca-tggctcat-ctggag-ctctc-atatactcgcgtgtctga-gatctatgc |
984 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||| |||||| |||||||| |||||| ||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
16873237 |
tcaaggtaacctttaaagaacctttgaaatctccaaacattggctcatcctggagcctctcaatatactcgcgtgtgtgaggatctatgc |
16873148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 369 - 723
Target Start/End: Complemental strand, 16571775 - 16571425
Alignment:
| Q |
369 |
tatttctatgaaaaatcaaacaggaacttctttgaacagtgacattggatatattaaaatgatatattactgaacgtcttatattgtaagcacatacatt |
468 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
16571775 |
tatttctatgaaaaatcaaacaggaatttctttgaacagtgacattggatctattaaaattatatattactgaacatcatatattgtaagcacatacatt |
16571676 |
T |
|
| Q |
469 |
tgaaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaat |
568 |
Q |
| |
|
| ||||||||| |||||||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
16571675 |
ttaaaaaagataggatttagtacctgttttggagtcttttcatgataacgactccgcgcaactccttgtgcgagcaattctttcaaccttccagcagaat |
16571576 |
T |
|
| Q |
569 |
aaagttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtgttga |
668 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16571575 |
aaagttcag----acagtcatgtgcttcagaaaccagcccagcacgaatagcacataggcctaactgtgacatagccctgttaaaatgtatctgtgttga |
16571480 |
T |
|
| Q |
669 |
aacgtccatgtggtgaccattttcttgtaaatgactcgtaagcaacagatcacgg |
723 |
Q |
| |
|
||||||| |||||||| || ||||||| |||||| || || |||||||||||||| |
|
|
| T |
16571479 |
aacgtccttgtggtgaacagtttcttgcaaatgattcatacgcaacagatcacgg |
16571425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 16580277 - 16580005
Alignment:
| Q |
11 |
gaaagataagtaaataaagagttaattgttatgttaaataaacacatgcttagctaagcaacaatttacaaaagagatgtactcaattgaatatgatgat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16580277 |
gaaagataagtaaataaagagttaattgttatgttaaataaacgcatgcttagcttagcaacaaattacaaaagagatgtactcaagtgaatatgatgat |
16580178 |
T |
|
| Q |
111 |
tcaaatgaaagaaaacttgagaattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattttc |
210 |
Q |
| |
|
|||||||||||||||| | | |||||| |||| ||||||| ||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |
|
|
| T |
16580177 |
tcaaatgaaagaaaacataataattgaggactgtaagaatcgaagacagagtgagattgttagaagatgcataaaatgaatatgtaaatttacaattttc |
16580078 |
T |
|
| Q |
211 |
-acaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaa |
282 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
16580077 |
aacaaagcaaataaaggatttaggaagggtactacagaatgtttctaaataaattaatcattgattaatccaa |
16580005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 16615103 - 16615375
Alignment:
| Q |
11 |
gaaagataagtaaataaagagttaattgttatgttaaataaacacatgcttagctaagcaacaatttacaaaagagatgtactcaattgaatatgatgat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16615103 |
gaaagataagtaaataaagagttaattgttatgttaaataaacgcatgcttagcttagcaacaaattacaaaagagatgtactcaagtgaatatgatgat |
16615202 |
T |
|
| Q |
111 |
tcaaatgaaagaaaacttgagaattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattttc |
210 |
Q |
| |
|
|||||||||||||||| | | |||||| |||| ||||||| ||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |
|
|
| T |
16615203 |
tcaaatgaaagaaaacataataattgaggactgtaagaatcgaagacagagtgagattgttagaagatgcataaaatgaatatgtaaatttacaattttc |
16615302 |
T |
|
| Q |
211 |
-acaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaa |
282 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
16615303 |
aacaaagcaaataaaggatttaggaagggtactacagaatgtttctaaataaattaatcattgattaatccaa |
16615375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 45 - 284
Target Start/End: Complemental strand, 16572281 - 16572041
Alignment:
| Q |
45 |
taaataaacacatgcttagctaagcaacaatttacaaaagagatgtactcaattgaatatgatgattcaaatgaaagaaaacttgagaattgaagactat |
144 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
16572281 |
taaataaacgcatgcttagcttagcaacaaattgcaaaagagatttactcaattgaatatgatgattcaaatgaaagaaaacttaataattgaagactat |
16572182 |
T |
|
| Q |
145 |
aagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattttc-acaaagcatataaaggatttaggaagggtacta |
243 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
16572181 |
aagaatcgaagacagagtgagattattagaagatgcaaaaaatgaatctgtaaatttacaattttcaacaaagcatgtaaaggatttaggaagggtacta |
16572082 |
T |
|
| Q |
244 |
cagaatgtttctaaagaaattaagcattgattaatccaaac |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16572081 |
cagaatgtttctaaagaaattaagcattgattaatccaaac |
16572041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 290 - 399
Target Start/End: Complemental strand, 16571903 - 16571794
Alignment:
| Q |
290 |
tttctgttcaaaactgatcaaccatgtaaagagaaataatgtgcctaaactgcacttcagatcaacattgatttttaattatttctatgaaaaatcaaac |
389 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
16571903 |
tttctgttcaaaactgataaaccatgtaaagagaaataatgtgcctaatctgcagttcagatcaacattgattttaaatcatttctatgaaaaatcaaac |
16571804 |
T |
|
| Q |
390 |
aggaacttct |
399 |
Q |
| |
|
||||| |||| |
|
|
| T |
16571803 |
aggaatttct |
16571794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 16783416 - 16783533
Alignment:
| Q |
164 |
agattgttagatgatgcaaaaaatgaatctgtaaatttacaattttca-caaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaa |
262 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||| |||||||||||||||| |||| || |||| | ||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
16783416 |
agattgttagcagatacaaaaaaggaatctgcaaatttacaattttcatcaaatcaaataatg-atttaggaaggatactacagaatgtttctagagaaa |
16783514 |
T |
|
| Q |
263 |
ttaagcattgattaatcca |
281 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
16783515 |
taaagcattgattaatcca |
16783533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 840 - 933
Target Start/End: Complemental strand, 16579986 - 16579883
Alignment:
| Q |
840 |
ctccggctcaaccaatgttctcaatgcatcataaacctcttgaggtt---------tgagttcaaccctcatc-aggcaacctttaaagaacctttgaaa |
929 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
16579986 |
ctccggctcaaccaatgttgtcattgcatcataaacctcttgaggtttgtagtaaatgagttcaaccctcatcaaggcaacctttaaagaaccttcaaaa |
16579887 |
T |
|
| Q |
930 |
tctc |
933 |
Q |
| |
|
|||| |
|
|
| T |
16579886 |
tctc |
16579883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 840 - 933
Target Start/End: Original strand, 16615394 - 16615497
Alignment:
| Q |
840 |
ctccggctcaaccaatgttctcaatgcatcataaacctcttgaggtt---------tgagttcaaccctcatc-aggcaacctttaaagaacctttgaaa |
929 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
16615394 |
ctccggctcaaccaatgttgtcattgcatcataaacctcttgaggtttgtagtaaatgagttcaaccctcatcaaggcaacctttaaagaaccttcaaaa |
16615493 |
T |
|
| Q |
930 |
tctc |
933 |
Q |
| |
|
|||| |
|
|
| T |
16615494 |
tctc |
16615497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 136 - 281
Target Start/End: Original strand, 16977898 - 16978044
Alignment:
| Q |
136 |
gaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattttc-acaaagcatataaaggatttagga |
234 |
Q |
| |
|
|||||||| ||| || |||||| ||||| |||| |||| ||| ||||||||||||||| |||||| |||||||| ||||| |||| ||||||||| ||| |
|
|
| T |
16977898 |
gaagactagaagcatccaagacaaagtgatattgctagaagatacaaaaaatgaatctgcaaattttcaattttcaacaaatcatacaaaggatttcgga |
16977997 |
T |
|
| Q |
235 |
agggtactacagaatgtttctaaagaaattaagcattgattaatcca |
281 |
Q |
| |
|
||| ||||||| |||| | | ||||| ||||||||||||||||| |
|
|
| T |
16977998 |
aggatactacaaaatgatggcatagaaagaaagcattgattaatcca |
16978044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 808 - 888
Target Start/End: Original strand, 17006889 - 17006969
Alignment:
| Q |
808 |
aacactaatccatccattaaggtcctgctgttctccggctcaaccaatgttctcaatgcatcat-aaacctcttgaggtttg |
888 |
Q |
| |
|
||||||||| || |||||| |||||||||||||||||||||| || ||||||||| ||| || | |||||||||| |||||| |
|
|
| T |
17006889 |
aacactaatgcagccattacggtcctgctgttctccggctcagcc-atgttctcattgcgtcgtaaaacctcttggggtttg |
17006969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 16832494 - 16832551
Alignment:
| Q |
296 |
ttcaaaactgatcaaccatgtaaagaga--aataatgtgcctaaactgcacttcagat |
351 |
Q |
| |
|
||||| ||| |||||||||||||||||| |||||| ||||||||||||| ||||||| |
|
|
| T |
16832494 |
ttcaagacttatcaaccatgtaaagagataaataatctgcctaaactgcagttcagat |
16832551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 290 - 720
Target Start/End: Original strand, 11860 - 12291
Alignment:
| Q |
290 |
tttctgttcaaaactgatcaaccatgtaaagagaaataatgtgcctaaactgcacttcagatcaacattgatttttaattatttctatgaaaaatcaaac |
389 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
11860 |
tttctgttcaaaactgatcaaccgtgtaaagagtaataatgtgcctaaactgcaattcagatcaacattgattttaaatcatttctatgaaaaatcaaac |
11959 |
T |
|
| Q |
390 |
aggaacttctttgaac-agtgacattggatatattaaaatgatatattactgaacgtcttatattgtaagcacatacatttgaaaaaagatgggatttag |
488 |
Q |
| |
|
||||| ||||| ||| ||||||||| ||| ||||||||| |||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11960 |
aggaatatctttaaaccagtgacatttgatctattaaaattatatattactgaacaccatatattgtaagcacatacattttaaaaaagatgggatttag |
12059 |
T |
|
| Q |
489 |
tacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataaagttcagacagacagtca |
588 |
Q |
| |
|
|||||||||| |||||||| |||||||||| || |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
12060 |
tacctgttctagagtcttttcatgataacgattctgtgcaactccttgtatgagcaattctttcaaccttccaccggaataaagttcagactgacagtca |
12159 |
T |
|
| Q |
589 |
tgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtgttgaaacgtccatgtggtgaccat |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12160 |
tgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactatgacatagccctgttaaaacgtatctgtgttgaaacgtccatgtggtgaacat |
12259 |
T |
|
| Q |
689 |
tttcttgtaaatgactcgtaagcaacagatca |
720 |
Q |
| |
|
||||||| ||||||||| | |||||||||||| |
|
|
| T |
12260 |
tttcttgcaaatgactcatgagcaacagatca |
12291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 11441 - 11714
Alignment:
| Q |
9 |
ctgaaagataagtaaataaagagttaattgttatgttaaataaacacatgcttagctaagcaacaatttacaaaagagatgtactcaattgaatatgatg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
11441 |
ctgaaagataagtaaataaagagttaattgttatgttaaataaacgcatgcttaggttagcaacgaattacaaaagagatgtactcaattgaatatgatg |
11540 |
T |
|
| Q |
109 |
attcaaatgaaagaaaacttgagaattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattt |
208 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
11541 |
attcaaatgaaagaaaacttaataattgaagactataagaatcgaagac--agtgagattgttagaagatgctaaaaatgaatctgtaaatttacaattt |
11638 |
T |
|
| Q |
209 |
tca-caaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaaa |
283 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11639 |
tcatcaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaatcaagcattgattaatccaaa |
11714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 598 - 888
Target Start/End: Original strand, 14399 - 14698
Alignment:
| Q |
598 |
gaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtgttgaaacgtccatgtggtgaccattttcttgta |
697 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||| |||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
14399 |
gaaaccatcccatcacgaaaagcacatacacctaattgtgacatagccctgttagaatgtatctgtgttgaaacgtccatgtggtgcacattttctttca |
14498 |
T |
|
| Q |
698 |
aatgactcgtaagcaacagatcacgggctttagtgaaatcat---------catggtgatgtatatgacaaagcattgcaagtgctttatcacgctcgtc |
788 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| ||| |||| ||||||||| ||||| || |||||||||| |||||||| | ||||| |
|
|
| T |
14499 |
aatgactcataagcaacagatcacggggtttagcgaactcatcatgaagaacatggtgatatatatcactaagcattgcacgtgctttagtgcagtcgtc |
14598 |
T |
|
| Q |
789 |
tccatatttgtatattagtaacactaatccatccattaaggtcctgctgttctccggctcaaccaatgttctcaatgcatcataaacctcttgaggtttg |
888 |
Q |
| |
|
| | |||||||| |||||| ||||||| |||||||||||||||||| |||||||||||| |||||||||| | ||| || ||||| |||||||||||| |
|
|
| T |
14599 |
tgcgtatttgtagattagtgtcactaatatatccattaaggtcctgctattctccggctcagccaatgttctaattgcctcgtaaacatcttgaggtttg |
14698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 828 - 888
Target Start/End: Original strand, 12293 - 12353
Alignment:
| Q |
828 |
ggtcctgctgttctccggctcaaccaatgttctcaatgcatcataaacctcttgaggtttg |
888 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| ||| || ||||||||||||| |||| |
|
|
| T |
12293 |
ggtcctgctgttctccgggtcagccaatgttctcattgcctcttaaacctcttgagatttg |
12353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 237; Significance: 1e-130; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 481 - 933
Target Start/End: Complemental strand, 21628022 - 21627546
Alignment:
| Q |
481 |
ggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataaagttcagaca |
580 |
Q |
| |
|
||||||| ||||||||||| ||| |||| |||||||| ||||| |||||||||||||||||||||||| ||| |||||||||| |||||||||||||| |
|
|
| T |
21628022 |
ggatttaatacctgttctggagttttttcatgataacaactccgtgcaactccttgtgcgagcaattctctcacccttccaccgggataaagttcagaca |
21627923 |
T |
|
| Q |
581 |
gacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaac-----gtatctgtgttgaaacgtcc |
675 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21627922 |
gacattcatgtgcttcagaaatcagtccagcacgaaaagcacatagacctaactgtgacatagccctgttaaaataaaaagtatctgtgttgaaacgtcc |
21627823 |
T |
|
| Q |
676 |
atgtggtgaccattttcttgtaaatgactcgtaagcaacagatcacgggctttagtgaaatcat---------catggtgatgtatatgacaaagcattg |
766 |
Q |
| |
|
||||||||| |||||||||| ||||||||| ||||||||||||||| |||||||||||| |||| ||||||||| ||||| ||||||||||| |
|
|
| T |
21627822 |
atgtggtgaacattttcttgcaaatgactcataagcaacagatcacaggctttagtgaactcatgatgaagagcatggtgatatatatcacaaagcattg |
21627723 |
T |
|
| Q |
767 |
caagtgctttatcacgctcgtctccatatttgtatattagtaacactaatccatccattaaggtcctgctgttctccggctcaaccaatgttctcaatgc |
866 |
Q |
| |
|
|| |||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||| |
|
|
| T |
21627722 |
cacgtgcttgaatgcgctcgtctccgtatttgtatattagtgacactaatccatccattaaggtcctactgttctccggctcagccaatgttctcattgc |
21627623 |
T |
|
| Q |
867 |
atcataaacctcttgaggtt---------tgagttcaaccctcatc-aggcaacctttaaagaacctttgaaatctc |
933 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
21627622 |
atcgtaaacctcttgaggtttgtagtaaatgagttcaaccctaatcaaggcaaccttagaagaacctttgaaatctc |
21627546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 466 - 684
Target Start/End: Complemental strand, 32791778 - 32791561
Alignment:
| Q |
466 |
atttgaaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccga |
565 |
Q |
| |
|
|||||||||| || ||||||||||||||| | || |||||||| ||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32791778 |
atttgaaaaaggaagggatttagtacctgctttggagtcttttcatgataatgactccgtgcaactccttgtgcgagcaattctttcacccttccaccgg |
32791679 |
T |
|
| Q |
566 |
aataaagttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtgt |
665 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
32791678 |
gataaagttcagacagacagtcatgtgcttcagaaatcagcccagcacgaaaagcacatagacctaac-gtgacatagccctgttaaaaagtatctgtgt |
32791580 |
T |
|
| Q |
666 |
tgaaacgtccatgtggtga |
684 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
32791579 |
tgaaacgtccatgtggtga |
32791561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 471 - 845
Target Start/End: Original strand, 235643 - 236026
Alignment:
| Q |
471 |
aaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataa |
570 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| ||||||||| ||| | ||||||||| || ||||||||||||| | ||||| ||||| |
|
|
| T |
235643 |
aaaaaagctgggatttagtacctgttctggagtcttttcatgataacggctctgtgaaactccttgcgcaagcaattctttcacacgcccaccagaataa |
235742 |
T |
|
| Q |
571 |
agttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtgttgaaa |
670 |
Q |
| |
|
||||| |||| |||| |||| |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
235743 |
agttccgacaaacagccatgcgcttcagaaaccagcccaacccgaaaagcacatagacctaactgtgacatagccctgttaaaaagtatttgtgtcgaaa |
235842 |
T |
|
| Q |
671 |
cgtccatgtggtgaccattttcttgtaaatgactcgtaagcaacagatcacgggctttagtgaaatc---------atcatggtgatgtatatgacaaag |
761 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| ||||||||| |||||||||| ||||| || | ||||||||| ||||| |||||| |
|
|
| T |
235843 |
tgtccatgtggtgaacattttcttgcaaatgactcataagcaacaaatcacgggctactgtgaactcgtcaagaagagcatggtgatatatatcacaaag |
235942 |
T |
|
| Q |
762 |
cattgcaagtgctttatcacgctcgtctccatatttgtatattagtaacactaatccatccattaaggtcctgctgttctccgg |
845 |
Q |
| |
|
|||||| |||||||| ||||| ||||| ||||||||||| ||| | ||||| ||||||||||||||||||| || ||||| |
|
|
| T |
235943 |
cattgcgcgtgctttagtgcgctcatctccgtatttgtatatcagtgatactaacacatccattaaggtcctgctattttccgg |
236026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 781 - 933
Target Start/End: Complemental strand, 32791557 - 32791395
Alignment:
| Q |
781 |
cgctcgtctccatatttgtatattagtaacactaatccatccattaaggtcctgctgttctccggctcaaccaatgttctcaatgcatcataaacctctt |
880 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| | |||||||||| || ||| |||||||||| |
|
|
| T |
32791557 |
cgctcgtctccgtatttgtatattagtgacactaatccatccattaagttcctgctgttctccagctcagctaatgttctcattgtatcgtaaacctctt |
32791458 |
T |
|
| Q |
881 |
gaggtt---------tgagttcaaccctcatc-aggcaacctttaaagaacctttgaaatctc |
933 |
Q |
| |
|
|| ||| ||||||||||||||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
32791457 |
gaagtttgtaggaaatgagttcaaccctcatcaaggcaaccttagaagaaactttgaaatctc |
32791395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 32792574 - 32792500
Alignment:
| Q |
162 |
tgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattttc-acaaagcatataaaggatttaggaa |
235 |
Q |
| |
|
|||||||| |||| ||| ||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
32792574 |
tgagattgctagaagatacaaaaaatgaatctgcaaatttacaatattcaacaaatcatataaaggatttaggaa |
32792500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 14536039 - 14535925
Alignment:
| Q |
132 |
aattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattttcacaaagcatataaaggattta |
231 |
Q |
| |
|
|||||||||||| ||| || |||||| ||||||||||| || |||||||||| |||| || || |||||||||| ||||| ||||||||||||| | |
|
|
| T |
14536039 |
aattgaagactagaagcatccaagacaaagtgagattgtgtgaagatgcaaaaattgaaact--aagtttacaatttcaacaaatcatataaaggattca |
14535942 |
T |
|
| Q |
232 |
ggaagggtactacagaa |
248 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
14535941 |
ggaaggatactacagaa |
14535925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 335 - 464
Target Start/End: Complemental strand, 32791961 - 32791833
Alignment:
| Q |
335 |
taaactgcacttcagatcaacattgatttttaattatttctatgaaaaatcaaacaggaacttctttgaa-cagtgacattggatatattaaaatgatat |
433 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||| |||||||||||||||| |||| || |||||| || ||||||| | |||| ||||| ||| ||| |
|
|
| T |
32791961 |
taaattgcaattcagatcaacattgattttaaataatttctatgaaaaatctaacataaatttctttaaagcagtgacttcggatctattacaat--tat |
32791864 |
T |
|
| Q |
434 |
attactgaacgtcttatattgtaagcacata |
464 |
Q |
| |
|
|||| | ||| || ||||||||| ||||||| |
|
|
| T |
32791863 |
attattcaacatcatatattgtatgcacata |
32791833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 21628207 - 21628161
Alignment:
| Q |
333 |
cctaaactgcacttcagatcaacattgatttttaattatttctatga |
379 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| |||||||||| |
|
|
| T |
21628207 |
cctaaactgcaattcagatcaacattgattttaaatcatttctatga |
21628161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 9e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 473 - 845
Target Start/End: Original strand, 48300068 - 48300449
Alignment:
| Q |
473 |
aaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataaag |
572 |
Q |
| |
|
||||| ||||||| ||||||||||||| |||||||| ||||||||| || | |||||||||||| |||| |||||||| || |||||| ||||||| |
|
|
| T |
48300068 |
aaaagctgggattgagtacctgttctggagtcttttcatgataacggttctgtgaaactccttgtgcaagcagttctttcacccgtccaccagaataaag |
48300167 |
T |
|
| Q |
573 |
ttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtgttgaaacg |
672 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| | |
|
|
| T |
48300168 |
ttcagacaaacagccatgtgcttcagaaaccaggccaacacgaaaagcacatagacctaactgtgacatagccctgttaaagagtatctgtgtcgaaatg |
48300267 |
T |
|
| Q |
673 |
tccatgtggtgaccattttcttgtaaatgactcgtaagcaacagatcacgggctttagtgaaatcat---------catggtgatgtatatgacaaagca |
763 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| ||||||||||||||||||| | || |||| ||||||||| ||||| |||||||| |
|
|
| T |
48300268 |
tccatgtggtgaacattttcttgcaaatgactcataagcaacagatcacgggcaactgcaaactcatctagaagagcatggtgatatatatcacaaagca |
48300367 |
T |
|
| Q |
764 |
ttgcaagtgctttatcacgctcgtctccatatttgtatattagtaacactaatccatccattaaggtcctgctgttctccgg |
845 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||||||||||||| | || || ||||||||||||||||||| |||||||| |
|
|
| T |
48300368 |
ttgcgcgtgctttagtgcgctcatctccgtatttgtatattagtgataccaacacatccattaaggtcctgctattctccgg |
48300449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 48299915 - 48299959
Alignment:
| Q |
357 |
ttgatttttaattatttctatgaaaaatcaaacaggaacttcttt |
401 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| | |||||| |
|
|
| T |
48299915 |
ttgattttaaattatttctatgaaaaatcaaacagggaattcttt |
48299959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 3e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 471 - 845
Target Start/End: Complemental strand, 7390162 - 7389779
Alignment:
| Q |
471 |
aaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataa |
570 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||| ||||||||| ||| | ||||||||| || |||||||| |||| || |||||| ||||| |
|
|
| T |
7390162 |
aaaaaagctgggatttagtacctgttctggggtcttttcatgataacggctctgtgaaactccttgcgcaagcaattccttcacccgtccaccagaataa |
7390063 |
T |
|
| Q |
571 |
agttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtgttgaaa |
670 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
7390062 |
agttcagacaaacagccatgcgcttcagaaaccagcccagcccgaaaagcacaaagacctaactgtgacatagccctgttaaaaagtatttgtgtcgaaa |
7389963 |
T |
|
| Q |
671 |
cgtccatgtggtgaccattttcttgtaaatgactcgtaagcaacagatcacgggctttagtgaaatcat---------catggtgatgtatatgacaaag |
761 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| | || |||| ||||||||| ||||| |||||| |
|
|
| T |
7389962 |
tgtccatgtggtgaacattttcttgcaaatgactcataagcaacagatcacgggctactgcaaactcatcaagaagagcatggtgatatatatcacaaag |
7389863 |
T |
|
| Q |
762 |
cattgcaagtgctttatcacgctcgtctccatatttgtatattagtaacactaatccatccattaaggtcctgctgttctccgg |
845 |
Q |
| |
|
|||||| |||||||| ||||| ||||| ||||| ||||| ||| | ||||| ||||||||||||||||||| || ||||| |
|
|
| T |
7389862 |
cattgcgcgtgctttagtgcgctcatctccgtatttatatatcagtgatactaacacatccattaaggtcctgctattttccgg |
7389779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 313 - 443
Target Start/End: Complemental strand, 7390340 - 7390210
Alignment:
| Q |
313 |
atgtaaagagaaataatgtgcctaaactgcacttcagatcaacattgatttttaat-tatttctatgaaaaatcaaacaggaacttcttt-gaacagtga |
410 |
Q |
| |
|
||||||||| |||||| | |||||||||| | ||||||| | || |||||| | ||||||||||||||||||||||| | |||||| || |||||| |
|
|
| T |
7390340 |
atgtaaagataaataaggcagctaaactgcaatccagatcaccttttattttttttctatttctatgaaaaatcaaacagagatttctttagagcagtga |
7390241 |
T |
|
| Q |
411 |
cattggatatattaaaatgatatattactgaac |
443 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| |
|
|
| T |
7390240 |
cattggatctattaaaat--tatattactgaac |
7390210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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