View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4633-Insertion-3 (Length: 1020)
Name: NF4633-Insertion-3
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4633-Insertion-3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 7 - 511
Target Start/End: Complemental strand, 9323282 - 9322779
Alignment:
| Q |
7 |
agcacgtggcctgactatctccatttcgaccgagctgttcctcatggaaaccttaaaatctgcaaatgtgttgttagataccactgatatgaatgcactg |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9323282 |
agcacgtggactgactatctccatttcgaccgagctgttcctcatggaaaccttaaaatctgcaaatgtgttgttagataccactgatatgaatgcactg |
9323183 |
T |
|
| Q |
107 |
gttgctgattattgtcttgaccgatttatgactcaagctggtactactattgaatagattttctcttatggtgtcttaggttattgcgcacacgagttag |
206 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9323182 |
gttgc-gattattgtcttgaccgacttatgactcaagctggtactactattgaatagattttctcttatggtgtcttaggttattgcgcacacgagttag |
9323084 |
T |
|
| Q |
207 |
ctgcttcaaagtagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgctggtgatgtggt |
306 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9323083 |
ctgcttcaaagaagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgctggtgatgtggt |
9322984 |
T |
|
| Q |
307 |
aactggcgaggagggaggtgttttatcttacagattggttagattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaactttgatgttagaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9322983 |
aactggcgaggagggaggtgttttatcttacagattggttagattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaactttgatgttagaa |
9322884 |
T |
|
| Q |
407 |
atgggaaatccagttgtagagaaggaaaagaatgaggtcttaggaatagtgattcgatgtattggatcggtttcttaaaggcctggtggctcatgctaac |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9322883 |
atgggaaatccagttgtagagaaggaaaagaatgaggtcttaggaatagtgattcgatgtattggatcggtttcttaaaggcctggtggctcatgctaac |
9322784 |
T |
|
| Q |
507 |
tactt |
511 |
Q |
| |
|
||||| |
|
|
| T |
9322783 |
tactt |
9322779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 510 - 916
Target Start/End: Complemental strand, 9322744 - 9322338
Alignment:
| Q |
510 |
ttggtaccatcccatatttgtttagagcatggctttttaacatgtttgtattaaccannnnnnncttggtgtacaacacattcatggctagcacatggtt |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9322744 |
ttggtaccatcccatatttgtttagagcatggctttttaacatgtttgtattaaccatttttttcttggtgtaaaacacattcatggctagcacatggtt |
9322645 |
T |
|
| Q |
610 |
gaatatgaccatttaattttgacttaaaatgataatgtgtcatgaaatgatcatttgtttgcaagtacaagagatgaaagattgtacaagttggtagagg |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9322644 |
gaatatgaccatttaattttgacttaaaatgataatgtgtcatgaaatgatcatttgtttgcaagtacaagagatgaaagattgtacaagttggtagagg |
9322545 |
T |
|
| Q |
710 |
aatggtttagcagttctatttttggttcattttatataattgtttgctgcaattatgagaacattaagtgcatgtttggattgcaaatgagtttgttaga |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9322544 |
aatggtttagcagttctatttttggttcattttatataattgtttgctgcaattatgagaacattaagtgcatgtttggattgcaaatgagtttgttaga |
9322445 |
T |
|
| Q |
810 |
atcaccccttgccgttgtgcttttaacaaaagttacatcttaagtttcnnnnnnnttatggtttttatgtgaaactcatcttgattctaaatatacattt |
909 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9322444 |
atcaccccttgccgttgtgcttttaacaaaagttacatcttaagtttcaaaaaaattatggtatttatgtgaaactcatcttgattctaaatatacattt |
9322345 |
T |
|
| Q |
910 |
aaactta |
916 |
Q |
| |
|
||||||| |
|
|
| T |
9322344 |
aaactta |
9322338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 7 - 492
Target Start/End: Original strand, 11423841 - 11424323
Alignment:
| Q |
7 |
agcacgtggcctga-ctatctccatttcgaccgagctgttcctcatggaaaccttaaaatctgcaaatgtgttgttagataccactgatatgaatgcact |
105 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| |||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11423841 |
agcacgtggcctgaactatctccattttgacagagctgttcctcatgggaaccttaaag-ctacaaatgtgttgttagatacagctgatatgaatgcacg |
11423939 |
T |
|
| Q |
106 |
ggttgctgattattgtcttgaccgatttatgactcaagctggtactactattgaatagattttctcttatggtgtcttaggttattgcgcacacgagtta |
205 |
Q |
| |
|
|| ||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||| | ||||||||||||||| |||||| |||||| |
|
|
| T |
11423940 |
tgtcgctgattattgtcttcaccgacttatgactcaagctggtacta---ttgagcagattcttgacgccggtgtcttaggttatcgcgcaccagagtta |
11424036 |
T |
|
| Q |
206 |
gctgcttcaaagtagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgctggtgatgtgg |
305 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||||||||||||||||| | ||| ||||||||||||||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
11424037 |
gctgcttccaagaagccaatgccttctttcaagtcagatgtctatgctttcggcgtgatacttttggaacttttaaccggaaggtgtgctggtgatgtga |
11424136 |
T |
|
| Q |
306 |
taactggcgaggagggaggtgttttatcttacagattggtta-gattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaactttgatgttag |
404 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
11424137 |
taactggtgaggagggaggtgttg-atcttacagattggctaagattgcgagtagcagaaggtcgaggctcggaatgtttcgatgcaactttgatgtcgg |
11424235 |
T |
|
| Q |
405 |
aaatgggaaatccagttgtagagaaggaaaagaatgaggtcttaggaatagtgattcgatgtattggatcggtttcttaaaggcctgg |
492 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||| |||||| ||||||||| |||||||||||| ||||||||||| |||||||||| |
|
|
| T |
11424236 |
aaatgggaaatccagttgtagaaaagggaatgaaggaggtcctaggaatagcaattcgatgtattcgatcggtttctgaaaggcctgg |
11424323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 7 - 456
Target Start/End: Complemental strand, 32304712 - 32304267
Alignment:
| Q |
7 |
agcacgtggcctga-ctatctccatttcgaccgagctgttcctcatggaaaccttaaaatctgcaaatgtgttgttagataccactgatatgaatgcact |
105 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| || |||||||||||||||||||| | | |||||||||| |
|
|
| T |
32304712 |
agcacgtggcctgaactatctccatttcgaccgagctgtccctcaaggaaaccttaaag-ctacaaatgtgttgttagataccgcgggtatgaatgcatg |
32304614 |
T |
|
| Q |
106 |
ggttgctgattattgtcttgaccgatttatgactcaagctggtactactattgaatagattttctcttatggtgtcttaggttattgcgcacacgagtta |
205 |
Q |
| |
|
|||| ||||||||||||| | ||| |||||||||| ||| |||||||||| ||||| | | | |||||||||||||| || | |||||| |
|
|
| T |
32304613 |
tgttgttgattattgtcttcatcgacttatgactcaggcta----tactattgaacagattcttgatgcttgtgtcttaggttatcacgttccggagtta |
32304518 |
T |
|
| Q |
206 |
gctgcttcaaagtagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgctggtgatgtgg |
305 |
Q |
| |
|
||||||| ||| || ||||||||||||||||||||||||||| | ||| || ||||| ||||| ||||||||||| |||| |||||| |||||||| |
|
|
| T |
32304517 |
actgcttccaagaagacaatgccttccttcaagtcagatgtctttgttttcggtgtgatgctttttgaacttttaaccggaaggtgtgcttgtgatgtga |
32304418 |
T |
|
| Q |
306 |
taactggcgaggagggaggtgttttatcttacagattggtta-gattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaactttgatgttag |
404 |
Q |
| |
|
||||| | ||||||||||||||| ||||| |||||||| || || || |||||||||||||||||| ||| |||||||| |||||||||||||||| || |
|
|
| T |
32304417 |
taactagtgaggagggaggtgttg-atcttgcagattggctaagactgtgagtagcagaaggtcgagtctcggaatgttttgatgcaactttgatgtcag |
32304319 |
T |
|
| Q |
405 |
aaatgggaaatccagttgtagagaaggaaaagaatgaggtcttaggaatagt |
456 |
Q |
| |
|
|||||||||||| ||||||||| |||| || ||| |||||| |||||||||| |
|
|
| T |
32304318 |
aaatgggaaatctagttgtagaaaagggaatgaaggaggtcataggaatagt |
32304267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 899 - 1020
Target Start/End: Complemental strand, 9322330 - 9322208
Alignment:
| Q |
899 |
aatatacatttaaacttattcgtgacaaaattcatgtgattttttatgaagttgtggtgctaccaataattacagctagaa-tttcaataaaagaaaaaa |
997 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9322330 |
aatatacatttaaacttattcgtgacaaaattcatgtgattttttatgaagttgt-gtgctaccaataattacagctagaattttcaataaaagaaaaaa |
9322232 |
T |
|
| Q |
998 |
taattcc-ataactaccttaagta |
1020 |
Q |
| |
|
||||||| ||||||||| |||||| |
|
|
| T |
9322231 |
taattccaataactaccataagta |
9322208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 331 - 476
Target Start/End: Complemental strand, 9330972 - 9330826
Alignment:
| Q |
331 |
atcttacagattggtta-gattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaactttgatgttagaaatgggaaatccagttgtagagaa |
429 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||| || |
|
|
| T |
9330972 |
atcttacagattggctaagattgcgagtagcataaggtcgaggctccgaatgtttcgatgcagctttgacgttagaaatgggaaatctaattgtagaaaa |
9330873 |
T |
|
| Q |
430 |
ggaaaagaatgaggtcttaggaatagtgattcgatgtattggatcgg |
476 |
Q |
| |
|
|| || |||||||||| ||||||||| |||||||| |||| |||||| |
|
|
| T |
9330872 |
gggaatgaatgaggtcctaggaatagcgattcgatatatttgatcgg |
9330826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 510 - 741
Target Start/End: Original strand, 11424415 - 11424639
Alignment:
| Q |
510 |
ttggtaccatcccatatttgtttagagcatggctttttaacatgtttgtattaaccannnnnnncttggtgtacaacacattcatggctagcacatggtt |
609 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| | || || ||||| ||| ||||| || |
|
|
| T |
11424415 |
ttggtatcatcccatatttgtttagagcatggctttttaacatgtttgtattaaccaatttttg-ttaatgtaaagcagatacatgggtagtacatgatt |
11424513 |
T |
|
| Q |
610 |
gaatatgaccatttaattttgacttaaaatgataatgtgtcatgaaatgatcatttgtttgcaagtacaagagatgaaagattgtacaagttggtagagg |
709 |
Q |
| |
|
| |||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||| | |||||||| |||| || || |
|
|
| T |
11424514 |
ggatatgaccatttgattttgtcttaaaatgggaatgtgtcatgaaatgatcatttgttt---ag--caagagatgaatg-ttgtacaatttggcagtgg |
11424607 |
T |
|
| Q |
710 |
aatggtttagcagttctatttttggttcattt |
741 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |
|
|
| T |
11424608 |
aatggtttagcagttctatttgtggttaattt |
11424639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 574 - 689
Target Start/End: Complemental strand, 9330698 - 9330583
Alignment:
| Q |
574 |
cttggtgtacaacacattcatggctagcacatggttgaatatgaccatttaattttgacttaaaatgataatgtgtcatgaaatgatcatttgtttgcaa |
673 |
Q |
| |
|
||||||||| | ||||| ||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
9330698 |
cttggtgtaaagcacatacattgctagcacatggttgaatatgtccatttaattttgtcttaaaatggtaatgtgtcatgaaatgttcatttgtttgcaa |
9330599 |
T |
|
| Q |
674 |
gtacaagagatgaaag |
689 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9330598 |
gtacaagagatgaaag |
9330583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 378 - 450
Target Start/End: Original strand, 11425636 - 11425708
Alignment:
| Q |
378 |
aatgtttcgatgcaactttgatgttagaaatgggaaatccagttgtagagaaggaaaagaatgaggtcttagg |
450 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| |||||||||||||| |||| || ||| |||||| |||| |
|
|
| T |
11425636 |
aatgttttgatgctactttgatgttagaaatggggaatccagttgtagaaaagggaatgaaggaggtcctagg |
11425708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 612 - 665
Target Start/End: Original strand, 11425916 - 11425969
Alignment:
| Q |
612 |
atatgaccatttaattttgacttaaaatgataatgtgtcatgaaatgatcattt |
665 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
11425916 |
atatgaccatttgattttgtcttaaaatgggaatgtgtcatgaaatgatcattt |
11425969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 510 - 547
Target Start/End: Complemental strand, 9330791 - 9330754
Alignment:
| Q |
510 |
ttggtaccatcccatatttgtttagagcatggcttttt |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9330791 |
ttggtaccatcccatatttgtttagagcatgacttttt |
9330754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 510 - 563
Target Start/End: Original strand, 11425803 - 11425856
Alignment:
| Q |
510 |
ttggtaccatcccatatttgtttagagcatggctttttaacatgtttgtattaa |
563 |
Q |
| |
|
|||||| |||| | ||||||||||| |||||||||||||| |||| |||||||| |
|
|
| T |
11425803 |
ttggtatcatctcgtatttgtttagggcatggctttttaagatgtctgtattaa |
11425856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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