View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4633-Insertion-4 (Length: 1010)
Name: NF4633-Insertion-4
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4633-Insertion-4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Complemental strand, 42031534 - 42031091
Alignment:
| Q |
8 |
gttgtgtaaatgaacttgtttcacattaattttttcatttccttgtatatcttataaaaatacaactgaccttgttagatatcccataatatttaaaaaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42031534 |
gttgtgtaaatgaacttgtttcacattaattttttcatttccttgtatatcttataaaaatacaactgaccttgttagatatcccataatatttaaaaaa |
42031435 |
T |
|
| Q |
108 |
tcatctatcttagggccaaagtgaaagatttttatagtttacttacaactgacgtaatggaaataagtgaacacagcttaaagagatgccataagtgatt |
207 |
Q |
| |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
42031434 |
tcatctatcttagggccaaagtgaaagagttttttagtttacttacaactgacgtaatggaaataagtgaacacaacttaaagagatgccataaatgatt |
42031335 |
T |
|
| Q |
208 |
atcttaacactaaggcaagtccttatgctatatcaacttaaagagaccatcaaatgacatttataaaatggttataagaatgagagtaagggatagcaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42031334 |
atcttaacactaaggcaagtccttatgctatatcaacttaaagagaccatcaaatgacatttataaaatggttataagaatgagagtaagggatagcaaa |
42031235 |
T |
|
| Q |
308 |
ataaaaaggatcataaatagaatcatcagtctgttacctttccagaggcctgttcaaaagctgcaaccatctccaaaactgatgttccctttcctgttcc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42031234 |
ataaaaaggatcataaatagaatcatcagtctgttacctttccagaggcctgttcaaaagctgcaaccatctccaaaactgatgttccctttcctgttcc |
42031135 |
T |
|
| Q |
408 |
caagttataaacctcacaacctgtatgcagacatgaaattttac |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42031134 |
caagttataaacctcacaacctgtatgcagacatgaaattttac |
42031091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 699 - 1007
Target Start/End: Complemental strand, 42030808 - 42030495
Alignment:
| Q |
699 |
atgtaagatcctcaaaagaaatcaaaggtagatcttaacaaatgggaattacgcatgtaagaatggaccaactgtggcatcattattatcaaaataatcc |
798 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030808 |
atgtaagatcctcaaaagaaatcaaaggtagatcttaacaaatgggaattacgcatgtaagaatggaccaactgtggcatcattattatcaaaataatcc |
42030709 |
T |
|
| Q |
799 |
aaatcgaagggaaatagtggatagtgtgtgagcttagcatgcaactttccaagtcaaaatttcagtaaaacaagtcaagaac-aaggaaacatactccag |
897 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
42030708 |
aaatcgaagggaaatagtggatagtgtgtgagcttagcatgcaactttccaagtcaaaatttcagcaaaacaagtcaagaacaaagaaaacatactccag |
42030609 |
T |
|
| Q |
898 |
ttccatcacttgtgctataatctgttcc-aaaactgtcaatgcagagcgtctgccaactgc-acttgctga--caaaggcatggaggttgttggg-attc |
992 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |||| |
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|
| T |
42030608 |
ttccatcacttgtgctataatctgttccaaaaactgtcaatgcagagcgtctgccaactgcaacttgctgaacaaaaggcat-gaggttgttgggaattc |
42030510 |
T |
|
| Q |
993 |
cgcgaggatcctcac |
1007 |
Q |
| |
|
||||||||||||||| |
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|
| T |
42030509 |
cgcgaggatcctcac |
42030495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 504 - 806
Target Start/End: Original strand, 41807607 - 41807898
Alignment:
| Q |
504 |
tatcattgtatatgggaatctaacatcagttcgcaaccattgtttttggctgaataaattattagaagaatttgatcaaatttcgaatagtacctgtctt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41807607 |
tatcattgtatatgggaatctaacatcagttcgcaaccattgtttttggctgaataaattattagaagaatttgatcaaatttcgaatagtacctgtctt |
41807706 |
T |
|
| Q |
604 |
aggatcatctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaaaaagac-aagatttatcatgt |
702 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
41807707 |
aggatcatctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaaaaagacaaagatttatcatgt |
41807806 |
T |
|
| Q |
703 |
aagatcctcaaaagaaatcaaaggtagatcttaacaaatgggaattacgcatgtaagaatggaccaactgtggcatcattattatcaaaataatccaaat |
802 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||| |
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|
| T |
41807807 |
aagatcctcaaaagaaatcaaaggtagatcttaacaaatg------------gtaagaatggaccaactatgacatcattattatcaaaataatgcaaat |
41807894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 504 - 716
Target Start/End: Complemental strand, 42031038 - 42030825
Alignment:
| Q |
504 |
tatcattgtatatgggaatctaacatcagttcgcaaccattgtttttggctgaataaattattagaagaatttgatcaaatttcgaatagtacctgtctt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42031038 |
tatcattgtatatgggaatctaacatcagttcgcaaccattgtttttggctgaataaattattagaagaatttgatcaaatttcgaatagtacctgtctt |
42030939 |
T |
|
| Q |
604 |
aggatcatctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaaaaagac-aagatttatcatgt |
702 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42030938 |
aggatcatctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaaaaagacaaagatttatcatgt |
42030839 |
T |
|
| Q |
703 |
aagatcctcaaaag |
716 |
Q |
| |
|
|||||||||||||| |
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|
| T |
42030838 |
aagatcctcaaaag |
42030825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 283 - 451
Target Start/End: Original strand, 41807386 - 41807554
Alignment:
| Q |
283 |
aagaatgagagtaagggatagcaaaataaaaaggatcataaatagaatcatcagtctgttacctttccagaggcctgttcaaaagctgcaaccatctcca |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41807386 |
aagaatgagagtaagggatagcaaaataaaaaggatcataaatagaatcatcagtctgttacctttccagaggcctgttcaaaagctgcaaccatctcca |
41807485 |
T |
|
| Q |
383 |
aaactgatgttccctttcctgttcccaagttataaacctcacaacctgtatgcagacatgaaattttac |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41807486 |
aaactgatgttccctttcctgttcccaagttataaacctcacaacctgtatgcagacatgaaattttac |
41807554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 41807173 - 41807355
Alignment:
| Q |
41 |
ttcatttccttgtatatcttataaaaatacaactgaccttgttagatatcccataatattta----aaaaatcatctatctta--gggccaaagtgaaag |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| | ||||| ||| ||||||| || |||||||||||| |
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|
| T |
41807173 |
ttcatttccttgtatatcttataaaaatacagctgactttgtttgatatcccataatattaaaaagaaaaaccatttatcttaagggcccaaagtgaaag |
41807272 |
T |
|
| Q |
135 |
atttttatagtttacttacaactgacgtaatggaaataa-gtgaacacagcttaaagagatgccataagtgattatcttaaca |
216 |
Q |
| |
|
|| |||| || ||| ||| || |||||||||||||||| |||||||| ||||||||||| ||||| | ||||||| |||| |
|
|
| T |
41807273 |
atatttacagcttaattagaatagacgtaatggaaataatttgaacacaacttaaagagatagcataatttattatctaaaca |
41807355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 335 - 433
Target Start/End: Original strand, 2126587 - 2126685
Alignment:
| Q |
335 |
agtctgttacctttccagaggcctgttcaaaagctgcaaccatctccaaaactgatgttccctttcctgttcccaagttataaacctcacaacctgtat |
433 |
Q |
| |
|
||||| ||||||| ||||| || |||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2126587 |
agtctattaccttcccagatgcatgttcaaaagctctaacaatctccgaaactgatgttccctttcctgttcccaagttataaacctcacaacctgtat |
2126685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 341 - 432
Target Start/End: Original strand, 2131182 - 2131273
Alignment:
| Q |
341 |
ttacctttccagaggcctgttcaaaagctgcaaccatctccaaaactgatgttccctttcctgttcccaagttataaacctcacaacctgta |
432 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
2131182 |
ttacctttccagatgccttctcaaaagctctaaccatctccaaaactgatgttccctttcctgtccccaagttataaacgtcacaacctgta |
2131273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 611 - 682
Target Start/End: Original strand, 2131398 - 2131469
Alignment:
| Q |
611 |
tctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaa |
682 |
Q |
| |
|
||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
2131398 |
tctagtttacgcaatgcagcaatatggccatcagctaaatcaacaacatgaatgtaatcccgaacctgagaa |
2131469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 622 - 682
Target Start/End: Original strand, 2126846 - 2126906
Alignment:
| Q |
622 |
caatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaa |
682 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||| || |||| |||| |
|
|
| T |
2126846 |
caatgcagcaatgtgcccatctgctaaatcaacaacatgaatgaaatcccgaacctaagaa |
2126906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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