View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4633-Insertion-5 (Length: 1005)
Name: NF4633-Insertion-5
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4633-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 926; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 926; E-Value: 0
Query Start/End: Original strand, 10 - 1005
Target Start/End: Complemental strand, 45209937 - 45208939
Alignment:
| Q |
10 |
ttatagcatagactatttctatgacaacacatattatgatttacttataccttaactaacattactctgatttgttgcagtgacatggaaggtgacatgc |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209937 |
ttatagcatagactatttctatgacaacacatattatgatttacttataccttaattaacattactctgatttgttgcagtgacatggaaggtgacatgc |
45209838 |
T |
|
| Q |
110 |
acatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatctttctatagcgagaatattgtaccctgcccgaactgttcatgcg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209837 |
acatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatctttctatagcgagaatattgtaccctgcccgaactgttcatgcg |
45209738 |
T |
|
| Q |
210 |
cctgccaagacaactcatttcaatcaggaagttgtatagagtaagatttcattacttttttgacactgtgatttccttctaaattgtaattaattgtgat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209737 |
cctgccaagacaactcatttcaatcaggaagttgtatagagtaagatttcattacttttttgacactgtgatttccttctaaattgtaattaattgtgat |
45209638 |
T |
|
| Q |
310 |
ttccttctaaattgtaattaatagagtaaataaatgtgttagtctttgacaccgcgatttctcactttagtccttgaaattgtaaaaagactgaaattaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
45209637 |
ttccttctaaattgtaattaatagagtaaataaatgtgttagtctttgacaccgcgatttctcactttagtccttgaaattgtaaagggactgaaattaa |
45209538 |
T |
|
| Q |
410 |
tattatacactcacatgtttccttttcatgtgtggttacagttcaagtaattcatcgaatttggcctcgattgttaacagccctggagagaaaggtgttg |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209537 |
tattatacactcacatgtttccttttcatgtgtggttacagttcaagtaattcatcgaatttggcctcgattgttaacagccctggagagaaaggtgttg |
45209438 |
T |
|
| Q |
510 |
agcctttagttgaatgtactaggcatatgtgtccgattaaagttcactggcacattaagcataactactatgagtattggcgcgtgaagattaccgtttt |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45209437 |
agcctttagttgaatgtactaggcatatgtgtccgattaaagttcactggcacattaagtataactactatgagtattggcgcgtgaagattaccgtttt |
45209338 |
T |
|
| Q |
610 |
taatttcaattacagaaagaattactcagactggaacgtggttgttcaacatccaaattttgataaattgacacaaattttcagttacaactacaaatca |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45209337 |
taatttcaattacagaaagaattactcagactggaacgtggttgttcaacatccaaattttgataaattgacacaaattttcagttacaactacaaatca |
45209238 |
T |
|
| Q |
710 |
ttagctccatatggatcaacaagtaagtttgtgtttgttcattatattc-aaggttttgctatcttatcaatat--aaatcaatgatgtactaatgaaaa |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
45209237 |
ttagctccatatggatcaacaagtaagtttgtgtttgttcattatattcaaaggttttgctatcttatcaatataaaaatcaatgatgtactaatgaaaa |
45209138 |
T |
|
| Q |
807 |
actggtcttaacagatgatactgcaatgctttggggagttaaatttttcaatgatgtactcatgcaagctggtcctaatggtaacgtacagtcggagcta |
906 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209137 |
actggtcttaacagatgatactgtaatgctttggggagttaaatttttcaatgatgtactcatgcaagctggtcctaatggtaacgtacagtcggagcta |
45209038 |
T |
|
| Q |
907 |
ctttttcgaaaggataaatcaagttttagtttccggtagcgggctgggg-tttccggag-agatttatttcaacggtgatgaatgtagtatgccaccacc |
1004 |
Q |
| |
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| T |
45209037 |
ctttttcgaaagaataaatcaagttttagtttcc-gtagc-ggctggggttttccggagaagatttatttcaacggtgatgaatgtagtatgccaccacc |
45208940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 9e-42; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 66 - 265
Target Start/End: Original strand, 5550497 - 5550696
Alignment:
| Q |
66 |
taacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatc |
165 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||| || |||||| ||| || ||| |||||||||| |
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| T |
5550497 |
taacataactctgattgtttgcagtgacatggaatgtgacatgcacatattcacaatttttagctcaacaaactccaacttgttgtgttgccctctcatc |
5550596 |
T |
|
| Q |
166 |
tttctatagcgagaatattgtaccctgcccgaactgttcatgcgcctgccaagacaactcatttcaatcaggaagttgtatagagtaagatttcattact |
265 |
Q |
| |
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| T |
5550597 |
attctacaatgatactattgtaccctgcccgacatgttcatgcggctgccaaggcaactcacctcaatcaggaagctgtatagagtaagatatcactact |
5550696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 511 - 743
Target Start/End: Original strand, 5550967 - 5551199
Alignment:
| Q |
511 |
gcctttagttgaatgtactaggcatatgtgtccgattaaagttcactggcacattaagcataactactatgagtattggcgcgtgaagattaccgttttt |
610 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||| || |||||||||||||||||||| ||||||| | |||||||||||||| ||| |||| ||| | |
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| T |
5550967 |
gcctttggttcaatgtactagtcatatgtgtcctatccgagttcactggcacattaagcttaactacaaggagtattggcgcgtaaaggttactgttact |
5551066 |
T |
|
| Q |
611 |
aatttcaattacagaaagaattactcagactggaacgtggttgttcaacatccaaattttgataaattgacacaaattttcagttacaactacaaatcat |
710 |
Q |
| |
|
|| ||||||||||| | |||||||||||| |||||| ||||||||||||||||||| ||||| || |||| ||| ||||||||| ||||| ||| || |
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|
| T |
5551067 |
aacttcaattacaggatgaattactcagattggaacttggttgttcaacatccaaactttgacaatctgactcaacttttcagtttcaactcaaaaccaa |
5551166 |
T |
|
| Q |
711 |
tagctccatatggatcaacaagtaagtttgtgt |
743 |
Q |
| |
|
|| |||| || || || | |||||||||||||| |
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|
| T |
5551167 |
taactccttacgggtcgataagtaagtttgtgt |
5551199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 40 - 268
Target Start/End: Complemental strand, 5540344 - 5540121
Alignment:
| Q |
40 |
atattatgatttacttataccttaactaacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacct |
139 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||||| || ||||||||||||| |||| ||||||||||||||||||||||| || |||| || |
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|
| T |
5540344 |
atattatgatttactaagaccttaac----attactctgatttttt-cagtgacatggaatgtgagatgcacatattcacaatttctagctccgaaaact |
5540250 |
T |
|
| Q |
140 |
ccaaattgctgcgtttccctctcatctttctatagcgagaatattgtaccctgcccgaactgttcatgcgcctgccaagacaactcatttcaatcaggaa |
239 |
Q |
| |
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|||| ||| || || | |||||||| ||||||| || | ||||||||||||||| | |||||||||| |||||| | ||||||| ||||||||||| |
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|
| T |
5540249 |
ccaacttgttgtgtcgctctctcatcattctataatgatactattgtaccctgcccaacatgttcatgcggctgccagggcaactcagctcaatcaggaa |
5540150 |
T |
|
| Q |
240 |
gttgtatagagtaagatttcattactttt |
268 |
Q |
| |
|
||||||||||||||||||| ||||||| |
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|
| T |
5540149 |
cctgtatagagtaagatttcactactttt |
5540121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 814 - 921
Target Start/End: Original strand, 5551688 - 5551795
Alignment:
| Q |
814 |
ttaacagatgatactgcaatgctttggggagttaaatttttcaatgatgtactcatgcaagctggtcctaatggtaacgtacagtcggagctactttttc |
913 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||||| ||||| || ||||||||||| | |
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|
| T |
5551688 |
ttaacagatgatacagcaatgctttggggagttaaattctacaatgatttactcatgcaagctggtcctattggtaatgtacaatcagagctacttttcc |
5551787 |
T |
|
| Q |
914 |
gaaaggat |
921 |
Q |
| |
|
|||||||| |
|
|
| T |
5551788 |
gaaaggat |
5551795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 511 - 709
Target Start/End: Complemental strand, 5539848 - 5539650
Alignment:
| Q |
511 |
gcctttagttgaatgtactaggcatatgtgtccgattaaagttcactggcacattaagcataactactatgagtattggcgcgtgaagattaccgttttt |
610 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||| || ||||||||||||||||||| | ||| || | |||||||||||||| ||| | || || | |
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|
| T |
5539848 |
gcctttggttcaatgtactagtcatatgtgtcctatccaagttcactggcacattaatcttaatgacaaggagtattggcgcgtaaaggtcactattact |
5539749 |
T |
|
| Q |
611 |
aatttcaattacagaaagaattactcagactggaacgtggttgttcaacatccaaattttgataaattgacacaaattttcagttacaactacaaatca |
709 |
Q |
| |
|
||||| |||||||| | |||||||||||| |||||| |||||||||| |||||||| ||| | || |||| ||| ||| ||||| ||||||||||||| |
|
|
| T |
5539748 |
aatttaaattacaggatgaattactcagattggaacttggttgttcagcatccaaacttttacaatctgactcaactttccagtttcaactacaaatca |
5539650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 814 - 923
Target Start/End: Complemental strand, 5539161 - 5539052
Alignment:
| Q |
814 |
ttaacagatgatactgcaatgctttggggagttaaatttttcaatgatgtactcatgcaagctggtcctaatggtaacgtacagtcggagctactttttc |
913 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| ||| ||||||| ||||||||||||| ||||||| |||||| ||||| | |||||| |||| | |
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|
| T |
5539161 |
ttaacagatgatgcaacaatgatttggggagttaaactttacaatgatttactcatgcaagccggtcctactggtaatgtacaattagagctaattttcc |
5539062 |
T |
|
| Q |
914 |
gaaaggataa |
923 |
Q |
| |
|
|||||||||| |
|
|
| T |
5539061 |
gaaaggataa |
5539052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 5539954 - 5539899
Alignment:
| Q |
402 |
gaaattaatattatacactcacatgtttccttttcatgtgtggttacagttcaagt |
457 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
5539954 |
gaaattaacattatacactcacacatttcctttttctgtgtggttacagtccaagt |
5539899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 5e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 5007817 - 5007928
Alignment:
| Q |
84 |
ttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatctttctatagcgagaatat |
183 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||| | ||||||| |||| | |||||| || ||||||||||||||||||| ||| | || |
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|
| T |
5007817 |
ttgcagtgacatggaatgttacatgcacatattcacaatttctggctcagaaaactccgacttgctgtgtctccctctcatctttctataacgataccat |
5007916 |
T |
|
| Q |
184 |
tgtaccctgccc |
195 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5007917 |
tgtaccctgccc |
5007928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 737
Target Start/End: Original strand, 5008124 - 5008349
Alignment:
| Q |
512 |
cctttagttgaatgtactaggcatatgtgtccgattaaagttcactggcacattaagcataactactatgagtattggcgcgtgaagattaccgttttta |
611 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||| || | | |||||||| ||||| ||||||| | || || ||||| |||||| || || || || |
|
|
| T |
5008124 |
cctttggttcaatgtactagtcatatgtgtccaatccgaatccactggcatgttaaggttaactacaaggaatactggcgtgtgaaggtttccattacta |
5008223 |
T |
|
| Q |
612 |
atttcaattacagaaagaattactcagactggaacgtggttgttcaacatccaaattttgataaattgacacaaattttcagttacaactacaaatcatt |
711 |
Q |
| |
|
|||| |||||| | | |||||| || || |||||| |||||||||| |||||||| || || || ||||| || | ||||||| ||||||||| ||||| |
|
|
| T |
5008224 |
attttaattaccgtatgaattattccgattggaacttggttgttcagcatccaaacttcgacaatttgactcagctgttcagtttcaactacaagtcatt |
5008323 |
T |
|
| Q |
712 |
agctccatatggatcaacaagtaagt |
737 |
Q |
| |
|
| ||| ||||| | || |||||||| |
|
|
| T |
5008324 |
aaatccttatggtttaataagtaagt |
5008349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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