View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4633-Insertion-6 (Length: 955)

Name: NF4633-Insertion-6
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4633-Insertion-6
NF4633-Insertion-6
[»] chr1 (8 HSPs)
chr1 (121-955)||(13273410-13274254)
chr1 (806-941)||(13273097-13273232)
chr1 (806-955)||(13273191-13273342)
chr1 (10-125)||(13274290-13274405)
chr1 (811-955)||(13273301-13273446)
chr1 (577-731)||(38204383-38204537)
chr1 (806-873)||(13273056-13273123)
chr1 (576-621)||(15283314-15283359)
[»] chr5 (4 HSPs)
chr5 (541-731)||(22179459-22179648)
chr5 (541-731)||(5909543-5909733)
chr5 (541-627)||(24177187-24177273)
chr5 (544-629)||(27679680-27679765)
[»] chr7 (3 HSPs)
chr7 (541-731)||(30802254-30802443)
chr7 (541-731)||(19511888-19512078)
chr7 (541-627)||(34103053-34103139)
[»] chr4 (6 HSPs)
chr4 (559-731)||(32348806-32348977)
chr4 (577-623)||(48029228-48029274)
chr4 (541-621)||(56337978-56338058)
chr4 (541-627)||(55261564-55261650)
chr4 (547-620)||(34104919-34104992)
chr4 (558-619)||(53569591-53569652)
[»] chr2 (4 HSPs)
chr2 (541-671)||(44941294-44941422)
chr2 (541-623)||(18634543-18634625)
chr2 (541-622)||(31265804-31265885)
chr2 (577-620)||(33280670-33280713)
[»] chr6 (3 HSPs)
chr6 (541-623)||(31706349-31706431)
chr6 (543-623)||(6936970-6937050)
chr6 (545-606)||(14586091-14586152)
[»] scaffold0057 (1 HSPs)
scaffold0057 (558-623)||(3430-3495)


Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 121 - 955
Target Start/End: Complemental strand, 13274254 - 13273410
Alignment:
Q  121 aattaaaagtagatatttggttatttcgaatcaaaatttatttgactgaatctctatttaactagataagataacacgagattggttttacttttacttg 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13274254 aattaaaagtagatatttggttatttcgaatcaaaatttatttgactggatctctatttaactagataagataacacgagattggttttacttttacttg 13274155  T
Q  221 gtgcttacatccaacttgccttttgagtacaatcattcaacggtagatagcaatttttatttcaagtgttacaactaactaat--------gttggtgcc 312  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  13274154 gtacttacatccaacttgccttt-gagtacaatcattcaacggtagatagcaatttttatttcaagtgttacaactaactaattaactaatgttggtgcc 13274056  T
Q  313 cttaagaaaaacgtgagtgtcatagtacccttgnnnnnnncgtgagtgtcggttggtgtttgagtaaataaagaatggcaatcaaatgtcgctgaatata 412  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13274055 cttaagaaaaacgtgagtgtcatagtacccttgaaaaaaacgtgagtgtcggttggtgtttgagtaaataaagaatggcaatcaaatgtcgcggaatata 13273956  T
Q  413 tagacaacggatcttgttaacgagttccttcgacacactattcaaacaatttaaattaataaaaagatgttatttatctttttaaagagtgttcgaagac 512  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  13273955 tagacaacggatcttgttaacgagttccttcgacacactatttaaacaatttaaattaataaaaatatgttatttatctttttaaagagtgttcaaagac 13273856  T
Q  513 aaccgttagcattctttaaagagtgttcaaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatc 612  Q
    ||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||  ||||| ||||| ||| |  ||||||||||||| ||||    
T  13273855 aactgttagcattctttaaagagtgttgaaagttaataatgccacttttgtgtacggttcacagagatagtggttggaacaattgatttgtttgggtatc 13273756  T
Q  613 aactgacctttatttgtatatatattgtattgacggtttgtttcttgggggtgggttccctaggacaccttatactgaggaacgtttaccaccattgtta 712  Q
    |||||||| || ||| |||||| |||||||||||||||||||||||||||   |||||||| | ||||||| |||||||||||  ||||| || ||||||    
T  13273755 aactgaccattgtttatatatacattgtattgacggtttgtttcttgggg--tggttccctggtacaccttgtactgaggaacaattaccgccgttgtta 13273658  T
Q  713 atatatttcattttagttt----nnnnnnnnnnnnnttgacaagctgagctaaatttgtgacaactaagacccatataagccacaaaaactactggccta 808  Q
    |||||||||||||||||||                 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  13273657 atatatttcattttagtttcttaaaaataaaaaaaattgactagctgagctaagtttgtgacaactaagacccatataagccacaaaaactactagccta 13273558  T
Q  809 cgaaatacattatctatataacttgttcataggtcatacatccaaaagtcaaaatcttgtggtccggcaaaatatcaaaatattggtgagtaagtattaa 908  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||| |||||||    
T  13273557 cgaaatacattatctatataacttgttcataggtcatacatccaaaaattaaaatcttgtggtcccgtaaaatatcaaaatattggtgagtatgtattaa 13273458  T
Q  909 tgccctctacaaaatacattatctatataacttg-acataggtcatac 955  Q
    |||||||||  ||||||||| ||||||||||||| |||||||||||||    
T  13273457 tgccctctattaaatacattgtctatataacttgtacataggtcatac 13273410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 806 - 941
Target Start/End: Complemental strand, 13273232 - 13273097
Alignment:
Q  806 ctacgaaatacattatctatataacttgttcataggtcatacatccaaaagtcaaaatcttgtggtccggcaaaatatcaaaatattggtgagtaagtat 905  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| | |||||||||||||||||||||||||||||    
T  13273232 ctacgaaatacattatctatataacttgttcataggtcatacatccaaaaatcaaaattttgtgatcccgtaaaatatcaaaatattggtgagtaagtat 13273133  T
Q  906 taatgccctctacaaaatacattatctatataactt 941  Q
    |||||| |||||| |||||||||||||||| |||||    
T  13273132 taatgctctctacgaaatacattatctataaaactt 13273097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 806 - 955
Target Start/End: Complemental strand, 13273342 - 13273191
Alignment:
Q  806 ctacgaaatacattatctatataacttgttcataggtcatacatccaaaag-tcaaaatcttgtggtccggcaaaatatcaaaatattggtgagtaagta 904  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||||| | ||||||||||||||||||||||||||||    
T  13273342 ctacaaaatacattatatatataacttgttcataggtcatacatccaaaaaatcaaaatcttgcggtcccgtaaaatatcaaaatattggtgagtaagta 13273243  T
Q  905 ttaatgccctctacaaaatacattatctatataacttg-acataggtcatac 955  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  13273242 ttaatgccctctacgaaatacattatctatataacttgttcataggtcatac 13273191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 13274405 - 13274290
Alignment:
Q  10 aatggtcttatatttaaggggcagaggtagtatatttttaatttcaaagtaatgtattattagttatggtgttcaagatattgatgaattgcaattggta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  13274405 aatggtcttatatttaaggggcagaggtagtatatttttaatttcaaagtaatatattatttgttatggtgttcaagatattgataaattgcaattggta 13274306  T
Q  110 tcaaacatcttaatta 125  Q
    ||||||||||||||||    
T  13274305 tcaaacatcttaatta 13274290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 811 - 955
Target Start/End: Complemental strand, 13273446 - 13273301
Alignment:
Q  811 aaatacattatctatataacttgttcataggtcatacatccaaaagtcaaaatcttgtggtccggcaaaatatcaaaatattggtgagtaagtattaatg 910  Q
    ||||||||| |||||||||||||| |||||||||||||||||| | |  |||| ||||||||| | ||||||||||||||||||| |||||||||| |||    
T  13273446 aaatacattgtctatataacttgtacataggtcatacatccaataatataaattttgtggtcccgtaaaatatcaaaatattggttagtaagtattgatg 13273347  T
Q  911 ccctctacaaaatacattatctatataacttg-acataggtcatac 955  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||    
T  13273346 ccctctacaaaatacattatatatataacttgttcataggtcatac 13273301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 577 - 731
Target Start/End: Original strand, 38204383 - 38204537
Alignment:
Q  577 agatggtggtcggaccttttgatttgtttggatatcaactgaccttt-atttgtatatatattgtattgacggtttgtttcttgggggtgggttccctag 675  Q
    |||||||||||||||| |||||||||||||| |||| |||  ||||| |||||||||||| ||||||||||  |||| ||||||||| ||||||| || |    
T  38204383 agatggtggtcggaccctttgatttgtttgggtatcgactagcctttgatttgtatatattttgtattgacactttggttcttgggg-tgggttctctgg 38204481  T
Q  676 gacaccttatactgaggaacgtttaccaccattgttaatatatttcattttagttt 731  Q
     ||||||| |||||||| || ||||||| | || ||||||||| ||||||||||||    
T  38204482 tacaccttctactgagggacctttaccatcgttattaatatatctcattttagttt 38204537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 806 - 873
Target Start/End: Complemental strand, 13273123 - 13273056
Alignment:
Q  806 ctacgaaatacattatctatataacttgttcataggtcatacatccaaaagtcaaaatcttgtggtcc 873  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| |||||||    
T  13273123 ctacgaaatacattatctataaaactttttcataggtcatacatccaaaaatcaaaatctcgtggtcc 13273056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 621
Target Start/End: Original strand, 15283314 - 15283359
Alignment:
Q  576 gagatggtggtcggaccttttgatttgtttggatatcaactgacct 621  Q
    |||||||||||||||||  |||| ||||||||||||| ||||||||    
T  15283314 gagatggtggtcggaccccttgacttgtttggatatcgactgacct 15283359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 541 - 731
Target Start/End: Original strand, 22179459 - 22179648
Alignment:
Q  541 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttatttgtatatatattgt 640  Q
    ||||||||||||| ||  |||| ||| |||||   |||||||| |||||||| ||| |||||||||| |||| |||||||||| |||||||||| ||| |    
T  22179459 aaagctaataatgtcatgtttgagtacggttctcagagatggtagtcggaccatttaatttgtttgggtatcgactgacctttgtttgtatatacattat 22179558  T
Q  641 attgacggtttgtttcttgggggtgggttccctaggacaccttatactgaggaacgtttaccaccattgttaatatatttcattttagttt 731  Q
    | |||| ||||||||||| |||||||||||| ||| || ||||||||||||||||||||||||||  | | |||||||| |||||||||||    
T  22179559 agtgacagtttgtttctt-ggggtgggttccttagtactccttatactgaggaacgtttaccaccgatttaaatatattccattttagttt 22179648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 541 - 731
Target Start/End: Original strand, 5909543 - 5909733
Alignment:
Q  541 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgaccttt-atttgtatatatattg 639  Q
    ||||| ||||| |||||||||||||| | |||   ||||||||||||||||| |||||||||||||| |||||||| ||||||  ||||||||||  |||    
T  5909543 aaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggaccctttgatttgtttgggtatcaactaacctttgttttgtatatactttg 5909642  T
Q  640 tattgacggtttgtttcttgggggtgggttccctaggacaccttatactgaggaacgtttaccaccattgttaatatatttcattttagttt 731  Q
    | |||||||||||||| || |||||| ||| | | | ||||||| ||||| ||||| | |||| || ||||||||||||  |||||||||||    
T  5909643 tcttgacggtttgttt-tttggggtgagtttcttggtacaccttgtactggggaacctctaccgccgttgttaatatatcccattttagttt 5909733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 541 - 627
Target Start/End: Complemental strand, 24177273 - 24177187
Alignment:
Q  541 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttattt 627  Q
    |||||||| || ||||||||| ||||||||||   ||||||||||| ||||   ||| |||| ||||||||| ||||||||||||||    
T  24177273 aaagctaacaaagccacttttatgtatggttctcagagatggtggttggactcgttgttttgcttggatatcgactgacctttattt 24177187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 629
Target Start/End: Original strand, 27679680 - 27679765
Alignment:
Q  544 gctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttatttgt 629  Q
    |||||||||| |||||||||||| |||||   || |||||||||||||| | || | ||||||| |||| || ||||||| |||||    
T  27679680 gctaataatgtcacttttgtgtacggttctcagaaatggtggtcggaccctatgctatgtttgggtatcgaccgacctttgtttgt 27679765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 7e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 541 - 731
Target Start/End: Original strand, 30802254 - 30802443
Alignment:
Q  541 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttatttgtatatatattgt 640  Q
    ||||||||||| ||||| |||||||| |||||   |||| |||||||||||| |||||||||||||| |||| ||| |||||| |||  |||||  ||||    
T  30802254 aaagctaataacgccacgtttgtgtacggttctcagagacggtggtcggaccctttgatttgtttgggtatcgactaacctttgttttcatatactttgt 30802353  T
Q  641 attgacggtttgtttcttgggggtgggttccctaggacaccttatactgaggaacgtttaccaccattgttaatatatttcattttagttt 731  Q
    |||||| |||||||| || |||||| ||| | | | ||||||| ||||| ||||| | |||| || |||||||||||| ||||||||||||    
T  30802354 attgacagtttgttt-tttggggtgagtttcttggtacaccttgtactggggaacctctaccgccgttgttaatatatctcattttagttt 30802443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 541 - 731
Target Start/End: Complemental strand, 19512078 - 19511888
Alignment:
Q  541 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttattt-gtatatatattg 639  Q
    ||||||||||| | ||  |||||||| |||||   ||||||||||||||||| | ||| |||||||| |||| | | |||||| ||| |||||||  |||    
T  19512078 aaagctaataacgtcatgtttgtgtacggttctcagagatggtggtcggaccctatgaattgtttgggtatcgaataacctttgttttgtatatactttg 19511979  T
Q  640 tattgacggtttgtttcttgggggtgggttccctaggacaccttatactgaggaacgtttaccaccattgttaatatatttcattttagttt 731  Q
    ||||||||||| |||| |||||| || ||| | | | ||||||| |||||   ||| | |||| || |||||||||||| | ||||||||||    
T  19511978 tattgacggttagttttttgggg-tgagtttcttggtacaccttgtactggaaaacctctaccgccgttgttaatatatcttattttagttt 19511888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 541 - 627
Target Start/End: Complemental strand, 34103139 - 34103053
Alignment:
Q  541 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttattt 627  Q
    ||||| |||||||||| ||||||||  || ||   ||||||||||||||||| |||  ||| ||||| |||| ||||||||||||||    
T  34103139 aaagccaataatgccaattttgtgtgcgggtcgcagagatggtggtcggaccatttactttatttgggtatcgactgacctttattt 34103053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 559 - 731
Target Start/End: Original strand, 32348806 - 32348977
Alignment:
Q  559 tttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttatttgtatatatattgtattgacggtttgtttctt 658  Q
    |||||||| |||||   ||||||||||||||| | |||||||||||||| |||| ||| |||||| ||||||||||  ||||||||||||||||||| ||    
T  32348806 tttgtgtacggttctcagagatggtggtcggatcctttgatttgtttgggtatcgactaacctttgtttgtatatactttgtattgacggtttgttt-tt 32348904  T
Q  659 gggggtgggttccctaggacaccttatactgaggaacgtttaccaccattgttaatatatttcattttagttt 731  Q
     |||||| ||| | | | ||||||| ||||| | ||| | |||| || ||||||||||||  |||||||||||    
T  32348905 tggggtgagtttcttggtacaccttgtactgggaaacctctaccgccgttgttaatatatcccattttagttt 32348977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 577 - 623
Target Start/End: Complemental strand, 48029274 - 48029228
Alignment:
Q  577 agatggtggtcggaccttttgatttgtttggatatcaactgaccttt 623  Q
    |||||||||||||||| |||| ||||||||| |||||||||||||||    
T  48029274 agatggtggtcggaccatttgttttgtttgggtatcaactgaccttt 48029228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 541 - 621
Target Start/End: Original strand, 56337978 - 56338058
Alignment:
Q  541 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacct 621  Q
    |||||||| |||||||||||||| ||||||||    |||||||||| |||||  ||| ||||||||| |||| ||||||||    
T  56337978 aaagctaacaatgccacttttgtttatggttctcaaagatggtggttggaccggttgctttgtttgggtatcgactgacct 56338058  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 541 - 627
Target Start/End: Complemental strand, 55261650 - 55261564
Alignment:
Q  541 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttattt 627  Q
    |||||||| || ||||||||||||||||||||   ||||||||||| |||||  ||  ||||  ||| |||| ||||||||||||||    
T  55261650 aaagctaacaaagccacttttgtgtatggttctcagagatggtggttggacccgttactttgactgggtatcgactgacctttattt 55261564  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 620
Target Start/End: Complemental strand, 34104992 - 34104919
Alignment:
Q  547 aataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacc 620  Q
    |||||||||  |||||| ||||||||   ||||||||||||||||| |||| | ||||||| |||| |||||||    
T  34104992 aataatgcctgttttgtatatggttctcagagatggtggtcggaccctttgttatgtttgggtatcgactgacc 34104919  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 619
Target Start/End: Complemental strand, 53569652 - 53569591
Alignment:
Q  558 ttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgac 619  Q
    ||||||||| |||||   ||||||||||||||||| |||  ||||||||| |||||||||||    
T  53569652 ttttgtgtacggttctcagagatggtggtcggaccctttactttgtttgggtatcaactgac 53569591  T

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Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 541 - 671
Target Start/End: Original strand, 44941294 - 44941422
Alignment:
Q  541 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttatttgtatatatattgt 640  Q
    |||||||| |||| ||| |||||||| ||||||  ||||||||||||||| | |||||| ||||||  |||||||| ||| || ||||||||||  ||||    
T  44941294 aaagctaacaatgtcacatttgtgtacggttcacagagatggtggtcggatcctttgatgtgtttgagtatcaactaacc-ttctttgtatatactttgt 44941392  T
Q  641 attgacggtttgtttcttgggggtgggttcc 671  Q
    ||| |||||||| ||||| ||||||||||||    
T  44941393 attaacggtttggttctt-ggggtgggttcc 44941422  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 623
Target Start/End: Complemental strand, 18634625 - 18634543
Alignment:
Q  541 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgaccttt 623  Q
    |||||||||||| |||| ||||||||||| ||   ||||||||||||||||| |||| | |||||||| |||||| |||||||    
T  18634625 aaagctaataataccacgtttgtgtatggctctcagagatggtggtcggaccctttgttatgtttggacatcaaccgaccttt 18634543  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 541 - 622
Target Start/End: Complemental strand, 31265885 - 31265804
Alignment:
Q  541 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctt 622  Q
    |||||| ||||| ||||||||||||||| |||    |||||||||||||||| |||  ||||||||| ||||||||||||||    
T  31265885 aaagctcataataccacttttgtgtatgattctcaaagatggtggtcggaccctttactttgtttgggtatcaactgacctt 31265804  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 620
Target Start/End: Complemental strand, 33280713 - 33280670
Alignment:
Q  577 agatggtggtcggaccttttgatttgtttggatatcaactgacc 620  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||    
T  33280713 agatggtggtcggacctgttgctttgtttggatatcgactgacc 33280670  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 623
Target Start/End: Complemental strand, 31706431 - 31706349
Alignment:
Q  541 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgaccttt 623  Q
    ||||||||||||||||| |||||||  || ||   ||||||||||||||||||||| |||||||||  |||| ||||||||||    
T  31706431 aaagctaataatgccacgtttgtgtgcggctctcagagatggtggtcggaccttttaatttgtttgagtatcgactgaccttt 31706349  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 543 - 623
Target Start/End: Complemental strand, 6937050 - 6936970
Alignment:
Q  543 agctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgaccttt 623  Q
    ||||||||| |||| ||||||||| |||||   ||||||| |||| |||| | |||||||||||| |||| ||||||||||    
T  6937050 agctaataacgccatttttgtgtacggttctcagagatggcggtcagaccctatgatttgtttgggtatcgactgaccttt 6936970  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 606
Target Start/End: Original strand, 14586091 - 14586152
Alignment:
Q  545 ctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttg 606  Q
    ||||||||||||| |||||||||||| |   ||||||||||||||| | |||| ||||||||    
T  14586091 ctaataatgccacatttgtgtatggtgcttagagatggtggtcggatcctttgctttgtttg 14586152  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 623
Target Start/End: Original strand, 3430 - 3495
Alignment:
Q  558 ttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgaccttt 623  Q
    |||||| |||||||||   ||||||||||||||||  ||||||||||||| |||| ||||||||||    
T  3430 ttttgtttatggttcacatagatggtggtcggacccgttgatttgtttgggtatcgactgaccttt 3495  T

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