View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4633-Insertion-8 (Length: 723)

Name: NF4633-Insertion-8
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4633-Insertion-8
NF4633-Insertion-8
[»] chr4 (2 HSPs)
chr4 (284-617)||(52548586-52548933)
chr4 (33-213)||(52548938-52549114)
[»] chr5 (1 HSPs)
chr5 (563-617)||(26619274-26619328)
[»] chr2 (4 HSPs)
chr2 (152-244)||(42988695-42988787)
chr2 (152-247)||(40060835-40060930)
chr2 (152-246)||(40086734-40086828)
chr2 (152-246)||(40078961-40079055)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 284 - 617
Target Start/End: Complemental strand, 52548933 - 52548586
Alignment:
Q  284 cttgcttagagtgacattggaagggagtttcacattagtatgaagtttgttcaactattataactatttgtatagaagttagagaaaagtaaaatggtag 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52548933 cttgcttagagtgacattggaagggagtttcacattagtatgaagtttgttcaactattataactatttgtatagaagttagagaaaagtaaaatggaag 52548834  T
Q  384 ttatcttgattaagaaagaatgaatacctaagacttatatagtcaatgagaagaataactaactagtataactattatgaacaaaggaaagagaaaggaa 483  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52548833 ttatattgattaagaaagaatgaatacctaagacttatatagtcaatgagaagaataactaactagtataactattatgaacaaaggaaagagaaaggaa 52548734  T
Q  484 attgatttctcattcctgaattagaagagtataagatacttatatacgcatattgagctctatgttagcttattgtatg--------------ttgctaa 569  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||    
T  52548733 attgatttctcattactgaattagaagagtataagatacttatatacgcatattgagctctatgttagcttattgtatgtaacctacattagattgctaa 52548634  T
Q  570 cacttaacaaactcaaagttatgcaatgaataagtaatcatttctaac 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52548633 cacttaacaaactcaaagttatgcaatgaataagtaatcatttctaac 52548586  T

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Target: chr4; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 52549114 - 52548938
Alignment:
Q  33 aatggtggcacatttgttaactactatatggtaaggatggatatatcattgaagttgtggtttatgtattcatttcatgccttgtaaactctgactttag 132  Q
    |||||||||||||| |||||||||||||||||||||||    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549114 aatggtggcacattcgttaactactatatggtaaggat----aaatcattgaagttgtggtttatgtattcatttcatgccttgtaaactctgactttag 52549019  T
Q  133 tgtatcattgttttggcctagtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549018 tgtatcattgttttggcctagtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttat 52548938  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 563 - 617
Target Start/End: Original strand, 26619274 - 26619328
Alignment:
Q  563 ttgctaacacttaacaaactcaaagttatgcaatgaataagtaatcatttctaac 617  Q
    |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||    
T  26619274 ttgctaacacataacaaactcaaagctatgcaatgattaagtaatcatttctaac 26619328  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 42988787 - 42988695
Alignment:
Q  152 agtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttatgactttgatgctccccttgatgaatttggta 244  Q
    |||||||||||||||| || |||| | ||||  ||||||| || |||||||||||||| ||||||| |||||| || |||||||||| |||||    
T  42988787 agtatcatggaggaacaaattttggtagaacagctggtggtcctttcattgctacaagctatgactatgatgcacctcttgatgaatatggta 42988695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 40060835 - 40060930
Alignment:
Q  152 agtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttatgactttgatgctccccttgatgaatttggtatgt 247  Q
    |||| ||||||||||| |||||||| |||| | | || ||||| ||||||||||||||||| || |||||||| ||  ||||||||| ||||||||    
T  40060835 agtaccatggaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatgt 40060930  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 246
Target Start/End: Original strand, 40086734 - 40086828
Alignment:
Q  152 agtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttatgactttgatgctccccttgatgaatttggtatg 246  Q
    |||| ||||||||||| |||||||| |||| | |||| ||||| |||||||| ||||||||||| |||||||| ||  ||||||| | |||||||    
T  40086734 agtaccatggaggaaccaactttgaccgaagtactggaggaccattcattgcaacaagttatgattttgatgcaccgattgatgagtatggtatg 40086828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 246
Target Start/End: Original strand, 40078961 - 40079055
Alignment:
Q  152 agtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttatgactttgatgctccccttgatgaatttggtatg 246  Q
    |||| ||||||||||| |||||||| |||| | | || ||||| |||||||||||||||||||| | |||||| ||  ||||||| | |||||||    
T  40078961 agtaccatggaggaaccaactttgaccgaagtaccggcggacctttcattgctacaagttatgattatgatgcaccgattgatgagtatggtatg 40079055  T

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