View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4633-Insertion-9 (Length: 483)
Name: NF4633-Insertion-9
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4633-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 356
Target Start/End: Original strand, 13519877 - 13520225
Alignment:
| Q |
8 |
aaacacgcctatgttctatacatgagtaagtaaatttgtaagcaacaccaacaagttaatccacaaaattgaatttacatattaatttccctttatttcc |
107 |
Q |
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| T |
13519877 |
aaacacgcctatgttctatacatgagtaagtaaatttgtaagcaacaccaacaagttaatctacaaaattgaatttacacattaatttccctttatttcc |
13519976 |
T |
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| Q |
108 |
tatgttcttcaatttgcacaatcacgccgccacggaatacagaaacagctccgatgaacaacacgatgaatgattcagatttgtttgaataatttgttag |
207 |
Q |
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| T |
13519977 |
tatgctcttcaatctgcacaatcacgcctccacggaatacggaaacagctcggatgaacaacaccatgaatgattcagatttgtttgaataatttgttag |
13520076 |
T |
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| Q |
208 |
attcgtattcgttttactgggttgaatctggattcatattcgttagattcgaattcatttgaagaatttgttagatttcggttgaatatggagttttgaa |
307 |
Q |
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| T |
13520077 |
attcgtattcgttttactgggttgaatctggattcatattcgttagattcgaattcatttgaagaatttgttagatttgggttgaatatggatttttgaa |
13520176 |
T |
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| Q |
308 |
tgatgaatgaataggaatgagttgctctatgcttctgcctttcttcttc |
356 |
Q |
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| T |
13520177 |
tgatgaatgaataggaatgagttgctctatgcttctgcctttcttcttc |
13520225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 178 - 344
Target Start/End: Original strand, 4125917 - 4126070
Alignment:
| Q |
178 |
tgattcagatttgtttgaataatttgttagattcgtattcgttttactgggttgaatctggattcatattcgttagattcgaattcatttgaagaatttg |
277 |
Q |
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| T |
4125917 |
tgattcagattcgtttgaagaatttgttggattcgtattcgttttactgggttgaatctggattcatattcgttagattc-------------aaatttg |
4126003 |
T |
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| Q |
278 |
ttagatttcggttgaatatggagttttgaatgatgaatgaataggaatgagttgctctatgcttctg |
344 |
Q |
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| T |
4126004 |
ttagatcagggttgaatatgaattcttgaatgatgaatgaataagaatgagttgttctatgtttctg |
4126070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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