View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4633_high_5 (Length: 264)
Name: NF4633_high_5
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4633_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 50985956 - 50985717
Alignment:
| Q |
17 |
actatgaagagatttaaagaaatattatttatgtggctcgacgggggcaacatacgtaaaataatttcaaaattcgaaattaaattttaggtaatgtaat |
116 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50985956 |
actatgaagagatttaaagaaatattatttacgcggctcgacgggggcaacatacgtaaaataatttcaaaattcgaaattaaattttaggtaatgtaat |
50985857 |
T |
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| Q |
117 |
gtaattaatttaggtttatttcctgaaattgagcgtgtcagattcacgtggagtggggttaagtttctggaattgctgaaaatatgagttggaaggagnn |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50985856 |
gtaattaatttaggtttatttcctgaaattgagcgtgtcagattcacgtggagtggggttaagtttctggaattgctgaaaatatgagttggaaggagtt |
50985757 |
T |
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| Q |
217 |
nnnnnctgcagaaaatatgtcagatttgggagagaataat |
256 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
50985756 |
tgtttctgcagaaaatatgtcagattttggagagaataat |
50985717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 51089090 - 51088851
Alignment:
| Q |
17 |
actatgaagagatttaaagaaatattatttatgtggctcgacgggggcaacatacgtaaaataatttcaaaattcgaaattaaattttaggtaatgtaat |
116 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51089090 |
actatgaagagatttaaagaaatattatttacgcggctcgacgggggcaacatacgtaaaataatttcaaaattcgaaattaaattttaggtaatgtaat |
51088991 |
T |
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| Q |
117 |
gtaattaatttaggtttatttcctgaaattgagcgtgtcagattcacgtggagtggggttaagtttctggaattgctgaaaatatgagttggaaggagnn |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51088990 |
gtaattaatttaggtttatttcctgaaattgagcgtgtcagattcacgtggagtggggttaagtttctggaattgctgaaaatatgagttggaaggagtt |
51088891 |
T |
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| Q |
217 |
nnnnnctgcagaaaatatgtcagatttgggagagaataat |
256 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
51088890 |
tgtttctgcagaaaatatgtcagattttggagagaataat |
51088851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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