View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4633_high_6 (Length: 243)
Name: NF4633_high_6
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4633_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 47836958 - 47836731
Alignment:
| Q |
1 |
ataaacagagatttagatttgagttcatgaggatgattgagaaatagttgtgatgttgcggttaggtctcttccttttcttatggtagctaactcctcta |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47836958 |
ataaacagcgatttagatttgagttcatgaggatgattgagaaatagttgtgatgttgcggttaggtctcttccttttcttatggtagctaactcctcta |
47836859 |
T |
|
| Q |
101 |
gcctttgactgaaaatcacgaacatcacgcaagtaaaacctaacagcaccatcaccaaaagggt---tacttccaccattgatctcttgatcatatgcgg |
197 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
47836858 |
gcctttgactggaaatcacgaacatcacgcaagtaaaacctaacagcaccatcaccaaaaggattactacttccaccattgatctcttgatcatatgcgg |
47836759 |
T |
|
| Q |
198 |
cgcggaggcgaccgacaagagcatcaag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
47836758 |
cgcggaggcgaccgacaagagcatcaag |
47836731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 35608910 - 35608806
Alignment:
| Q |
62 |
ttaggtctcttccttttcttatggtagctaactcctctagcctttgactgaaaatcacgaacatcacgcaagtaaaacctaacagcaccatcaccaaaag |
161 |
Q |
| |
|
||||| |||||||||||||| | |||||||| ||||||| |||| |||||||||||||| || | || |||| |||||||| || | |||||||| |
|
|
| T |
35608910 |
ttaggcctcttccttttcttttcatagctaacccctctagattttgcttgaaaatcacgaacgtcccttaaataaatcctaacagaacgagaaccaaaag |
35608811 |
T |
|
| Q |
162 |
ggtta |
166 |
Q |
| |
|
||||| |
|
|
| T |
35608810 |
ggtta |
35608806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University