View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4633_low_3 (Length: 372)
Name: NF4633_low_3
Description: NF4633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4633_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 30 - 357
Target Start/End: Complemental strand, 45181702 - 45181375
Alignment:
| Q |
30 |
taccgtgcacctgaactatgtggttcttttttcacaaaagtaagttttttgtttgacatcatattttcttgggttgtgtatgtgtacgtgtacgtgtgat |
129 |
Q |
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| T |
45181702 |
taccgtgcacctgaactatgtggttcttttttcacaaaagtaagttttttgtttgacatcatattttcttgggttgtgtatgtgt----------gtgat |
45181613 |
T |
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| Q |
130 |
acaagatcaaggtgactacacttgatgtattgaaatat-----------gcatgtaatttataatccttgtcttatgcggtatacccctggaattgatat |
218 |
Q |
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| T |
45181612 |
acaagatcaaggtgactacacttgatgtattgaaatatatattatatatgcatgtaatttataatccttgtcttatgcggtatacccctggaattgatat |
45181513 |
T |
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| Q |
219 |
ttggaacattggatgcatattttgcagaagtgcttactgggaggccattgtttcctgggacaaatacgaagaaccaattggatatcatgactgatttact |
318 |
Q |
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| T |
45181512 |
ttggagcattggatgcatattt-gcagaagtgcttactgggaggccattgtttcctcggacaaataggaagaaccaattggatatcatgactgatttgct |
45181414 |
T |
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| Q |
319 |
tggaactcctcctcctgagtccatggtcaatgtaagttt |
357 |
Q |
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| T |
45181413 |
tggaactcctcctcctgagtccatggtcaacgtaagttt |
45181375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 149 - 342
Target Start/End: Complemental strand, 45174690 - 45174498
Alignment:
| Q |
149 |
acttgatgtattgaaatatgcatgtaatttataatccttgtcttatgcggtatacccctggaattgatatttggaacattggatgcatattttgcagaag |
248 |
Q |
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| T |
45174690 |
acttgatgtattgaaatatgtatgtaatttatattccctttcttatgcagtatacacctggaattgatatttggagcattggatgcata-tttgcagaaa |
45174592 |
T |
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| Q |
249 |
tgcttactgggaggccattgtttcctgggacaaatacgaagaaccaattggatatcatgactgatttacttggaactcctcctcctgagtccat |
342 |
Q |
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| T |
45174591 |
tgcttactgggaggccattgtttcctgggaaaaatgtggtgcatcaattggatatcatgactgatttgcttggcactcctcctcctgagtccat |
45174498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 45174805 - 45174745
Alignment:
| Q |
17 |
tgcaactaggtggtaccgtgcacctgaactatgtggttcttttttcacaaaagtaagtttt |
77 |
Q |
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| T |
45174805 |
tgcaactaggtggtaccgtgcacctgaactatgtggttcttttttctcaaaagtaagtttt |
45174745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 156 - 342
Target Start/End: Complemental strand, 29961651 - 29961466
Alignment:
| Q |
156 |
gtattgaaatatgcatgtaatttataatccttgtcttatgcggtatacccctggaattgatatttggaacattggatgcatattttgcagaagtgcttac |
255 |
Q |
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| T |
29961651 |
gtattgaaatatgtatgtaatttcaaattcttgtcttttgcagtatactccagcgattgatatttggagcattggatgcata-tttgcagaaatgcttag |
29961553 |
T |
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| Q |
256 |
tgggaggccattgtttcctgggacaaatacgaagaaccaattggatatcatgactgatttacttggaactcctcctcctgagtccat |
342 |
Q |
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| T |
29961552 |
tggcaagccattgtttcctgggaaaaatgtggtgcaccagttagacctcatgactgatttgcttggtactcctcctactgaatccat |
29961466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 29962014 - 29961966
Alignment:
| Q |
25 |
ggtggtaccgtgcacctgaactatgtggttcttttttcacaaaagtaag |
73 |
Q |
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| T |
29962014 |
ggtggtatcgtgcacctgaactatgtggttcttttttctcaaaagtaag |
29961966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 30814718 - 30814788
Alignment:
| Q |
205 |
cctggaattgatatttggaacattggatgcatattttgcagaagtgcttactgggaggccattgtttcctgg |
276 |
Q |
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| T |
30814718 |
cctgcaattgatatatggagcattggttgcat-ttttgcggaagtgcttacaggaaagccattgtttcctgg |
30814788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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