View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4634-Insertion-11 (Length: 308)
Name: NF4634-Insertion-11
Description: NF4634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4634-Insertion-11 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 5563327 - 5563619
Alignment:
| Q |
16 |
atataacacactcttctctttctctacgtaaaaaaccataggtcagtccatnnnnnnnnnnnnnnggctcgtagagaccattttgagctggtgtaacaca |
115 |
Q |
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| T |
5563327 |
atataacacactcttctctttctctacgtaaaaaaccatagctcagtccataaaaaagaaaaaaaggatcgtagagaccattttgagctggtgtaacaca |
5563426 |
T |
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| Q |
116 |
ctcttcaagttcttcaacaaggaaggagagctgatggaaaaattgctcaagtctttctctgcactcaggatcttgcttcaacaaccaaggaaagtacttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5563427 |
ctcttcaagttcttcaacaaggaaggagagctgatggaaaaattgctcaagtctttctctgcactcaggatcttgcttcaacaaacaaggaaagtacttt |
5563526 |
T |
|
| Q |
216 |
ctatttc-nnnnnnnnacatactttttagttaatttcttagtttgtttctcattgcatgttcatttcccttttattctgattttgagtttttt |
307 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5563527 |
ctatttctttttttttacatactttttagttaatttcttagtttgtttctcattgcatgttcatttcccttttattctgattttgagtttttt |
5563619 |
T |
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