View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4634-Insertion-14 (Length: 216)
Name: NF4634-Insertion-14
Description: NF4634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4634-Insertion-14 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 45 - 197
Target Start/End: Complemental strand, 28381622 - 28381472
Alignment:
| Q |
45 |
ggtatgatatggaatattggtgttaaagaacattgttttgattcttgttgatagatgaatattcggaaggattttgaaatggnnnnnnnnnnnnnnnaag |
144 |
Q |
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| T |
28381622 |
ggtatgatatggaatattggtgttaaagaacattgttttgattcttgttgatagatggatattcggaaggattttgaaatgg--ttttttactttttaag |
28381525 |
T |
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| Q |
145 |
tgtagttaacgagattatggattctgattgattggtatattggttttcatttt |
197 |
Q |
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| T |
28381524 |
tgtagttaacgagattatggattctgattgattggtatattggttttcatttt |
28381472 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 33001212 - 33001261
Alignment:
| Q |
77 |
ttgttttgattcttgttgatagatgaatattcggaaggattttgaaatgg |
126 |
Q |
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| T |
33001212 |
ttgttttgattcttgttgatagatgcatattcgaaaggattctgaaatgg |
33001261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 33001268 - 33001303
Alignment:
| Q |
142 |
aagtgtagttaacgagattatggattctgattgatt |
177 |
Q |
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| T |
33001268 |
aagtgtagttaacaagattatggattctgattgatt |
33001303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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