View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4634-Insertion-2 (Length: 1000)

Name: NF4634-Insertion-2
Description: NF4634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4634-Insertion-2
NF4634-Insertion-2
[»] chr8 (8 HSPs)
chr8 (284-983)||(5902288-5902988)
chr8 (103-269)||(5902162-5902326)
chr8 (12-80)||(28566357-28566425)
chr8 (24-83)||(1946063-1946122)
chr8 (12-80)||(28560859-28560927)
chr8 (12-80)||(28573980-28574048)
chr8 (27-83)||(1982198-1982255)
chr8 (48-83)||(38925205-38925240)
[»] chr2 (3 HSPs)
chr2 (361-885)||(42875448-42875972)
chr2 (8-83)||(465411-465485)
chr2 (24-83)||(6840082-6840143)
[»] chr7 (6 HSPs)
chr7 (8-83)||(18260993-18261068)
chr7 (8-83)||(33631073-33631148)
chr7 (8-83)||(33622969-33623044)
chr7 (24-83)||(11698430-11698489)
chr7 (24-82)||(7316996-7317056)
chr7 (38-83)||(7477755-7477800)
[»] chr3 (8 HSPs)
chr3 (8-83)||(3422904-3422979)
chr3 (10-81)||(43191233-43191304)
chr3 (8-83)||(30272733-30272806)
chr3 (25-81)||(579831-579887)
chr3 (24-83)||(52657148-52657207)
chr3 (27-83)||(47361928-47361985)
chr3 (14-83)||(52662038-52662107)
chr3 (32-79)||(13165816-13165863)
[»] chr6 (3 HSPs)
chr6 (8-83)||(7213107-7213182)
chr6 (24-83)||(1161834-1161893)
chr6 (18-85)||(35163972-35164039)
[»] chr4 (6 HSPs)
chr4 (8-79)||(3937863-3937934)
chr4 (10-76)||(45067177-45067243)
chr4 (11-83)||(25110096-25110168)
chr4 (25-83)||(47159813-47159871)
chr4 (26-82)||(51806215-51806271)
chr4 (32-82)||(5674265-5674315)
[»] chr5 (6 HSPs)
chr5 (12-83)||(7280504-7280575)
chr5 (24-79)||(36874324-36874379)
chr5 (22-83)||(39044854-39044915)
chr5 (25-83)||(39790062-39790122)
chr5 (12-83)||(27179295-27179366)
chr5 (12-82)||(13943188-13943258)
[»] chr1 (3 HSPs)
chr1 (19-79)||(8239873-8239933)
chr1 (22-80)||(50715620-50715679)
chr1 (24-74)||(19176977-19177027)
[»] scaffold0002 (1 HSPs)
scaffold0002 (32-79)||(141125-141172)


Alignment Details
Target: chr8 (Bit Score: 637; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 284 - 983
Target Start/End: Original strand, 5902288 - 5902988
Alignment:
Q  284 catgtgattgttctttggctcaaaaattaaatattgtctttgtatatatgacttttgataggaccattgagttacaaaggactttatcatctattctacc 383  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5902288 catgtgattgttttttggctcaaaaattaaatattgtctttgtatatatgacttttgataggaccattgagttacaaaggactttatcatctattctacc 5902387  T
Q  384 aatacaatcctaaaggtgcagtttggggaaatattgtatgggcacattctgtttcaactgatcttgttaactggaccccactagatccagccatctttcc 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5902388 aatacaatcctaaaggtgcagtttggggaaatattgtatgggcacattctgtttcaactgatcttgttaactggaccccactagatccagccatctttcc 5902487  T
Q  484 atctcaaccgtccgatataaatggttgttggtcaggatcagccacaatactccatggtaacaaaccagctattttatacactggaattgacccaatgaat 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5902488 atctcaaccgtccgatataaatggttgttggtcaggatcagccacaatacttcatggtaacaaaccagctattttatacactggaattgacccaatgaat 5902587  T
Q  584 caccaagttcaaaatatagcataccctaaaaatttatctgacccttttctaagggaatggattaagtcaccaaaaaatccattaatggaaccaactaatg 683  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5902588 caccaagttcaaaatatagcataccctaaaaatttatccgacccttttctaagggaatggattaagtcaccaaaaaatccattaatggaaccaactagtg 5902687  T
Q  684 aaaataaaattaatgcaagttcatttagagatccaactagtggttggttaggaaaagatggaaattggaggataattattggtagcaaaagaaacactag 783  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5902688 aaaataaaattaatgcaagttcatttagagatccaactagtggttggttaggaaaagatggaaattggaggataattattggtagcaaaagaaacactag 5902787  T
Q  784 gggaattgcaattttgtataagagtaaagattttattaattggattaaatcaaaacaccctttgcattcagctaaaggcactggaatgtgggagtgtcct 883  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5902788 gggaattgcaattttgtataagagtaaagattttattaattggattaaatcaaaacaccctttgcattcagctaaaggcactggaatgtgggagtgtcct 5902887  T
Q  884 ga-nnnnnnnctgttttg-aaattggtagatttggtgttgacacgtcattaaatagtgacgatgttaggcatggtattgaaagttagtttggatgataaa 981  Q
    ||        |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  5902888 gatttttttcctgttttgaaaattggtagatttggtgttgacacgtcattaaatagtgacgatgttaggcat-gtattgaaggttagtttggatgataaa 5902986  T
Q  982 aa 983  Q
    ||    
T  5902987 aa 5902988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 103 - 269
Target Start/End: Original strand, 5902162 - 5902326
Alignment:
Q  103 gttgtcattcaaagaataggtgaattatattttgaaattttgtttttaatatnnnnnnnnnnnnnnnggaagtgggccagcaaaatatgaatataatgat 202  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||                 |||||||||||||||||||||||||||||||||    
T  5902162 gttgtcattcaaagaatagatgaattatattttgaaattttatttttaat--caaaaaaattaaaaaggaagtgggccagcaaaatatgaatataatgat 5902259  T
Q  203 agtttaaggttttcagaagttgatatttcatgtgattgttttttggctcaaaaatgaaatattgtct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5902260 agtttaaggttttcagaagttgatatttcatgtgattgttttttggctcaaaaattaaatattgtct 5902326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 28566425 - 28566357
Alignment:
Q  12 tgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaa 80  Q
    |||||||| ||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||||||||    
T  28566425 tgtttcctaattccatgtggtttataataattgtgttggttaatgaaagttatctctatttaccaaaaa 28566357  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 1946122 - 1946063
Alignment:
Q  24 ccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    |||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  1946122 ccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttaccaaaaaaaa 1946063  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 28560927 - 28560859
Alignment:
Q  12 tgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaa 80  Q
    |||||||| ||||||| | |||| |||||| ||  ||||||||||||||||||||||||||||||||||    
T  28560927 tgtttcctaattccatctggtttataataattgcgttggttaatgaaagttatctctatttaccaaaaa 28560859  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 28574048 - 28573980
Alignment:
Q  12 tgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaa 80  Q
    |||||||| ||||||| | |||| |||||| ||  ||||||||||||||||||||||||||||||||||    
T  28574048 tgtttcctaattccatctggtttataataattgcgttggttaatgaaagttatctctatttaccaaaaa 28573980  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 1982255 - 1982198
Alignment:
Q  27 tgtagtttgtaataactgttttggttaatgaaagttatctctattta-ccaaaaaaaa 83  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  1982255 tgtagtttataataactattttgattaatgaaagttatctctatttatccaaaaaaaa 1982198  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 38925240 - 38925205
Alignment:
Q  48 tggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    ||||||||||||||||||||||||||| ||||||||    
T  38925240 tggttaatgaaagttatctctatttactaaaaaaaa 38925205  T

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Target: chr2 (Bit Score: 162; Significance: 6e-86; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 361 - 885
Target Start/End: Complemental strand, 42875972 - 42875448
Alignment:
Q  361 aggactttatcatctattctaccaatacaatcctaaaggtgcagtttggggaaatattgtatgggcacattctgtttcaactgatcttgttaactggacc 460  Q
    ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| |  ||||  |||||||| || |||||     
T  42875972 aggactttatcatctgttctaccaatacaatccaaaaggtgctgtttggggaaatattgtgtgggcccattcagcatcaaaggatcttgtgaattggaca 42875873  T
Q  461 ccactagatccagccatctttccatctcaaccgtccgatataaatggttgttggtcaggatcagccacaatactccatggtaacaaaccagctattttat 560  Q
    ||| | ||||  || |||   |||||||||||||| |||||||| |||||||||||||| ||||| |||||||| |  |||  ||||||||| |||||||    
T  42875872 ccattggatcatgcaatccacccatctcaaccgtcagatataaaaggttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttat 42875773  T
Q  561 acactggaattgacccaatgaatcaccaagttcaaaatatag-cataccctaaaaatttatctgacccttttctaagggaatggattaagtcaccaaaaa 659  Q
    |||| |||||||| ||||  ||||| ||||||||||| |||| ||||||| |||||| | |||||||| || || || |||||||  || ||||||||||    
T  42875772 acacaggaattgatccaaataatcatcaagttcaaaacatagccataccc-aaaaatatgtctgacccattacttagagaatggaaaaaatcaccaaaaa 42875674  T
Q  660 atccattaatggaaccaactaatgaaaataaaattaatgcaagttcatttagagatccaactagtggttggttaggaaaagatggaaattggaggataat 759  Q
    ||||||| |||||||| |||  ||  || ||||||||||||||||||||||| || ||||||| |  |||| |||||||||||||  |||||||| || |    
T  42875673 atccattgatggaacctactgttgctaacaaaattaatgcaagttcatttagggacccaactacttcttggctaggaaaagatggttattggagggtatt 42875574  T
Q  760 tattggtagcaaaagaaacactaggggaattgcaattttgtataagagtaaagattttattaattggattaaatcaaaacaccctttgcattcagctaaa 859  Q
     ||||| ||||||  | | |  | ||||||||||||| |||| || |||||| ||||| || ||||| || || | ||||| ||||| ||||||||| ||    
T  42875573 aattggaagcaaagtacatagaaagggaattgcaattatgtacaaaagtaaaaattttgttgattggtttgaagccaaacatcctttacattcagctgaa 42875474  T
Q  860 ggcactggaatgtgggagtgtcctga 885  Q
    || || ||||||||||||||||||||    
T  42875473 ggaacaggaatgtgggagtgtcctga 42875448  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 465485 - 465411
Alignment:
Q  8 ttagtgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    ||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  465485 ttagtatttcctgatttcatgtagtttgtaataattgttttggttaatgaaagttatctcta-ttaccaaaaaaaa 465411  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 6840082 - 6840143
Alignment:
Q  24 ccatgtagtttgtaataactgttttgg--ttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    ||||||||||||||||||||||||| |  ||| |||||||||||||||||||||||||||||    
T  6840082 ccatgtagtttgtaataactgtttttggtttattgaaagttatctctatttaccaaaaaaaa 6840143  T

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Target: chr7 (Bit Score: 72; Significance: 3e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 18261068 - 18260993
Alignment:
Q  8 ttagtgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18261068 ttagtgtttcctgattccatgtagtttgtaatatctgttttggttaatgaaagttatctctatttaccaaaaaaaa 18260993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 33631148 - 33631073
Alignment:
Q  8 ttagtgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  33631148 ttagtctttcctgattccatgtagtttgtaataactcttttggttaatgaaagttatctctatttatcaaaaaaaa 33631073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 33623044 - 33622969
Alignment:
Q  8 ttagtgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||| |||||    
T  33623044 ttagtgttttctgattccatgtagtttgtaatatctgttttggttaatgaaaaatatctctatttaccaacaaaaa 33622969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 11698489 - 11698430
Alignment:
Q  24 ccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  11698489 ccatatagtttgtaataattgtttcggttaatgaaagttatctctatttaccaaaaaaaa 11698430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 7317056 - 7316996
Alignment:
Q  24 ccatgtagtttgtaataactgttttgg--ttaatgaaagttatctctatttaccaaaaaaa 82  Q
    |||||||||||||||||||| |||| |  ||||||||||||||||||||||||||||||||    
T  7317056 ccatgtagtttgtaataactatttttggtttaatgaaagttatctctatttaccaaaaaaa 7316996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 7477800 - 7477755
Alignment:
Q  38 ataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  7477800 ataattgttttggttaatgaaagttatctctatttaccaaaaaaaa 7477755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 3e-32; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 3422979 - 3422904
Alignment:
Q  8 ttagtgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3422979 ttagtctttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 3422904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 43191304 - 43191233
Alignment:
Q  10 agtgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaa 81  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43191304 agtgtttccttattccatgtagtttgtaataattgttttggttaatgaaagttatctctatttaccaaaaaa 43191233  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 30272806 - 30272733
Alignment:
Q  8 ttagtgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||    
T  30272806 ttagtgttttctgattccatgtagtttgtaataactgttttggttaatgaaag--atatctatttaccaaaaaaaa 30272733  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 579831 - 579887
Alignment:
Q  25 catgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaa 81  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  579831 catgtagtttgtaataattgttttggttaatgaaagttatctctatttaccaaaaaa 579887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 52657207 - 52657148
Alignment:
Q  24 ccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  52657207 ccatgtagtttgtaataattgttttggttaatgaaatttatctctatttaccaaaaaaaa 52657148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 47361928 - 47361985
Alignment:
Q  27 tgtagtttgtaataactgttttggttaatgaaagttatctctattt-accaaaaaaaa 83  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  47361928 tgtagtttgtaatgactgttttggttaatgaaagttatctctatttaaccaaaaaaaa 47361985  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 52662107 - 52662038
Alignment:
Q  14 tttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    |||| |||| |||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||    
T  52662107 tttcttgatgccatgtagtttgtaataattgttttggttaatgaaatttacctctatttactaaaaaaaa 52662038  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 13165816 - 13165863
Alignment:
Q  32 tttgtaataactgttttggttaatgaaagttatctctatttaccaaaa 79  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||||    
T  13165816 tttgtaataattgttttggttaatgaaatatatctctatttaccaaaa 13165863  T

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Target: chr6 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 7213182 - 7213107
Alignment:
Q  8 ttagtgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  7213182 ttagtgttttctgattccatgtagtttgtaataactgttttgattaatgaaagatatctctatttaccaaaaaaaa 7213107  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 1161834 - 1161893
Alignment:
Q  24 ccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1161834 ccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 1161893  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 35164039 - 35163972
Alignment:
Q  18 ctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaagt 85  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  35164039 ctgattccatctaatttgtaataactgttttggttaatgaaagttatctctattttcgaaaaaaaagt 35163972  T

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Target: chr4 (Bit Score: 64; Significance: 2e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 3937934 - 3937863
Alignment:
Q  8 ttagtgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaa 79  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3937934 ttagtgttttctgattccatgtagtttgtaataactgttttggttaatgaaagatatctctatttaccaaaa 3937863  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 45067177 - 45067243
Alignment:
Q  10 agtgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttacca 76  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  45067177 agtgtttcctgcttccatgtagtttgtaataactattttggttagtgaaagttatctctatttacca 45067243  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 25110096 - 25110168
Alignment:
Q  11 gtgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    |||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  25110096 gtgtttcacgattccatgtagtttgtaataactgttttggttaacgaaagttatctctatttacagaaaaaaa 25110168  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 47159871 - 47159813
Alignment:
Q  25 catgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  47159871 catgtagtttgtaataaatgttttggttagtgaaatttatctctatttaccaaaaaaaa 47159813  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 51806271 - 51806215
Alignment:
Q  26 atgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaa 82  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  51806271 atgtagattgtaataactgttttggttaatgaaagttatctctttttcccaaaaaaa 51806215  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 5674265 - 5674315
Alignment:
Q  32 tttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaa 82  Q
    ||||||||| ||||||||||||||||||   ||||||||||||||||||||    
T  5674265 tttgtaatatctgttttggttaatgaaatgcatctctatttaccaaaaaaa 5674315  T

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Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 7280504 - 7280575
Alignment:
Q  12 tgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||    
T  7280504 tgtttcctgattccatgtagtttgtaataactgtgttggttaataaaagttatctccatttacaaaaaaaaa 7280575  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 36874324 - 36874379
Alignment:
Q  24 ccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaa 79  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36874324 ccatgtagtttgtaataactattttggttaatgaaagttttctctatttaccaaaa 36874379  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 39044915 - 39044854
Alignment:
Q  22 ttccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  39044915 ttccttgtagtttgtaataattgttttggttaatgaaagttatctccatttaccaacaaaaa 39044854  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 39790122 - 39790062
Alignment:
Q  25 catgtagtttgtaataactgttttgg--ttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    ||||||||||||||||| |||||| |  ||||||||||||||||||||||| |||||||||    
T  39790122 catgtagtttgtaataattgtttttggtttaatgaaagttatctctatttatcaaaaaaaa 39790062  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 27179366 - 27179295
Alignment:
Q  12 tgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaaa 83  Q
    |||||| |||||| ||| ||||||||||| |||||||| |||||||||  |||||||| |||  ||||||||    
T  27179366 tgtttcttgattctatgaagtttgtaatatctgttttgattaatgaaatatatctctagttaaaaaaaaaaa 27179295  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 13943188 - 13943258
Alignment:
Q  12 tgtttcctgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaaaaa 82  Q
    |||||| |||||| | | ||||||||||| || ||||| ||||| |||  |||||||||||||||||||||    
T  13943188 tgtttcttgattctacgaagtttgtaatatctattttgattaataaaatatatctctatttaccaaaaaaa 13943258  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 8239933 - 8239873
Alignment:
Q  19 tgattccatgtagtttgtaataactgttttggttaatgaaagttatctctatttaccaaaa 79  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  8239933 tgatgccatttagtttgtaatgactgttttgattaatgaaagttatctttatttacaaaaa 8239873  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 50715679 - 50715620
Alignment:
Q  22 ttccatgtagtttgtaataactgttt-tggttaatgaaagttatctctatttaccaaaaa 80  Q
    |||||||||||||||||||  ||||| ||||||||| ||||||||||| |||||||||||    
T  50715679 ttccatgtagtttgtaatagttgtttatggttaatggaagttatctctttttaccaaaaa 50715620  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 19176977 - 19177027
Alignment:
Q  24 ccatgtagtttgtaataactgttttggttaatgaaagttatctctatttac 74  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||| |||||    
T  19176977 ccatgtagtttataataattgttttggttaatgaaagatatctctctttac 19177027  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 141172 - 141125
Alignment:
Q  32 tttgtaataactgttttggttaatgaaagttatctctatttaccaaaa 79  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||||    
T  141172 tttgtaataattgttttggttaatgaaatatatctctatttaccaaaa 141125  T

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