View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4634-Insertion-3 (Length: 810)
Name: NF4634-Insertion-3
Description: NF4634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4634-Insertion-3 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 752; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 8 - 810
Target Start/End: Original strand, 24788614 - 24789415
Alignment:
| Q |
8 |
attacaatattattttttacgactagttgcttttagaattgaatcactgtcctctggtacaggaaaagacaattggttctgcggcacctgttaatgggca |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24788614 |
attacaatattatttttaacgactagttgcttttagaattgaatcactgtcctctggtacaggaaaagacaattggttctgcggcacctgttaatgggca |
24788713 |
T |
|
| Q |
108 |
aacaaaagttaaatcatgtacacgaaaagggtccaagggtaagagacttctgaggaagagccttgcaggtttgtacttcccaattatttcatattctcgt |
207 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24788714 |
aacaatagttaaatcatgtatgcgaaaagggtccaagggtaagagacttctgaggaagagccttgcaggtttgtacttcccaattatctcatattctcgt |
24788813 |
T |
|
| Q |
208 |
tcgttaattttaaagatatttctttgttgttaagttatatattcttatcctat--cacccagatgctggtacatcatgggagtctggagtaaggagaagc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24788814 |
tcgttaattttaaagatatttctttgttgttaagttatatattcttatcctatatcacccagatgctggtacatcatgggagtctggagtaaggagaagc |
24788913 |
T |
|
| Q |
306 |
accaggttcaggacaaagcctttggaatattggaaaggagaaagaatggtgtatggccgtgtacacgagagtgagtacaatcatagtacttcgttatatt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24788914 |
accaggttcaggacaaagcctttggaatattggaaaggagaaagaatggtgtatggccgtgtacacgagagtgagtacaatcatagtacttcgttatatt |
24789013 |
T |
|
| Q |
406 |
tagagaattggatttggcctaatcctaccatgtgtaaaatgtagataacaaatcttttgtttgtgcaggtttgagtactgtcattggggtgaagtgcatg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24789014 |
tagagaattggatttggcctaatcctaccatgtgtaaaatgtagataacaaatcttttgtttgtgcaggtttgagtactgtcattggggtgaagtgcatg |
24789113 |
T |
|
| Q |
506 |
tctcctggaagtgatgggaaaccaaccatgaaggctaaatcatttgtgtcagataaatacaaagagctttttgagatagcttctgaatattgaaagcttt |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24789114 |
tctcctggaagtgatgggaaaccaaccatgaaggttaaatcatttgtgtcagataaatacaaagagctttttgagatagcttctgaatattgaaagcttt |
24789213 |
T |
|
| Q |
606 |
ctataattttatctttagtctactaatggaattgacatgtgaaaagtgtttaattatttgaagtgataaatatactcggtacttacatccaggagtcagc |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24789214 |
ctataattttatctttagtctactaatggaattgacatgtgataagtgtttaattatttgaagtgataaatatactcggtacttacatccaggagtcagc |
24789313 |
T |
|
| Q |
706 |
aatgattatggttaatcagtcatcaatgaaattaactaacatgactaaattttagtactaattgatacaattaactgaattattatgattatgtggttgt |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24789314 |
aatgattatggttaatcagtcatcaatgaaattaactaacatgactaaattttagtactaattgatacaattaactga---attatgattatgtggttgt |
24789410 |
T |
|
| Q |
806 |
ataag |
810 |
Q |
| |
|
||||| |
|
|
| T |
24789411 |
ataag |
24789415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 6e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 12 - 406
Target Start/End: Complemental strand, 24300654 - 24300268
Alignment:
| Q |
12 |
caatattattttttacgactagtt--gcttttagaattgaatcactgtcctctggtacaggaaaagacaattggttctgcggcacctgttaatgggcaaa |
109 |
Q |
| |
|
|||||||||||||| || |||||| ||||||||||||||||| ||||| |||| |||||||||| ||| ||||||||| |||||||||||||||||||| |
|
|
| T |
24300654 |
caatattatttttttcggctagttttgcttttagaattgaatccctgtcttctgatacaggaaaacacagttggttctgtggcacctgttaatgggcaaa |
24300555 |
T |
|
| Q |
110 |
caaaagttaaatcatgtacacgaaaagggtccaagggtaagag------acttctgaggaagagccttgcaggtttgtacttcccaattatttcatattc |
203 |
Q |
| |
|
| ||||||| |||| ||| |||| |||||||||||||| || | |||| |||||||||||||||||||||| || |
|
|
| T |
24300554 |
agagagttaaagtatgtgcacagaaagtgtccaagggtaagaagagagaacagcacaggatgagccttgcaggtttgtacttctca-------------- |
24300469 |
T |
|
| Q |
204 |
tcgttcgttaattttaaagatatttctttgttgttaagttatatattcttatcctatcac-ccagatgctggtacatcatgggagtctggagtaaggaga |
302 |
Q |
| |
|
||| |||||||| || || || ||| ||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24300468 |
---ttcattaattttcaaaattttcgttttctgtcaagttatatattcttatcgtatctttccagatgctggtacatcatgggagtctggagtaaggaga |
24300372 |
T |
|
| Q |
303 |
agcaccaggttcaggacaaagcctttggaatattggaaaggagaaagaatggtgtatggccgtgtacacgagagtgagtacaatcatagtacttcgttat |
402 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||| || ||||| |
|
|
| T |
24300371 |
agcaaaaggttcaggacaaggcctttggaatattggaaaggggaaagaatggtgtatggccgtgtacatgagagtgagtacaatcgtagtattttgttat |
24300272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 466 - 601
Target Start/End: Complemental strand, 24300074 - 24299939
Alignment:
| Q |
466 |
ttgtgcaggtttgagtactgtcattggggtgaagtgcatgtctcctggaagtgatgggaaaccaaccatgaaggctaaatcatttgtgtcagataaatac |
565 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| || | ||||| ||| ||||||||||||||| |||||||| ||||||||||| || ||||||||| |
|
|
| T |
24300074 |
ttgtgcaggtttgagtactgtcatcggggtgaagcgcttttctccaggaggtgatgggaaaccaaacatgaaggtgaaatcatttgtatctgataaatac |
24299975 |
T |
|
| Q |
566 |
aaagagctttttgagatagcttctgaatattgaaag |
601 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||| |
|
|
| T |
24299974 |
aaacagctttttgagatagcttccttatattgaaag |
24299939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 718 - 771
Target Start/End: Complemental strand, 24299760 - 24299706
Alignment:
| Q |
718 |
taatcagtcatcaatgaaattaactaacatgactaaatttt-agtactaattgat |
771 |
Q |
| |
|
||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
24299760 |
taatctgtcagcaatgaaattaaccaacatgactaaattttcagtactaattgat |
24299706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University