View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4634-Insertion-4 (Length: 710)
Name: NF4634-Insertion-4
Description: NF4634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4634-Insertion-4 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 632; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 8 - 710
Target Start/End: Original strand, 38311594 - 38312313
Alignment:
| Q |
8 |
gcacctcattctcaaccacctcttccttcatgcatgccttccaatggccacactacttctattcctgaagacaccagcaaccactttgtctccgaggagc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311594 |
gcacctcattctcaaccacctcttccttcatgcatgccttccaatggccacactacttctattcctgaagacaccagcaaccactttgtctccgaggagc |
38311693 |
T |
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| Q |
108 |
tctcaaatctcaattgagtctaagagtcggttttctttcgcttactttgcaccttcgca-----------------ttatgtcacactctgttagggagg |
190 |
Q |
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| T |
38311694 |
tctcaaatctcaattgagtctaagagtcggttttctttcgcttactttgcaccttcgcagcttgttcttgagcgcattatgtcacactctgttagggagg |
38311793 |
T |
|
| Q |
191 |
tttttactactctttactaacaataaagacactcatacccacacatacccgcacacatatcctcagttaacgatgggcattatctttattaatattgttt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38311794 |
tttttactactctttactaacaataaagacactcatacccacacatacccacacacatatcctcagttaacaatgggcattatctttattaatattgttt |
38311893 |
T |
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| Q |
291 |
gttttgcatatgcaacaggatgtgtcgccattaacatcagatagaatatctctcagcagcgagcctttgaatcatggtggtgcattagccggatcaggga |
390 |
Q |
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| T |
38311894 |
gttttgcatatgcaacaggatgtgtcgccattaacatcagatagaatatctctcagcagcgagcctttgaatcatggtggtgcattagccggatcaggga |
38311993 |
T |
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| Q |
391 |
gtccaccaatttgtcattcagatcaatttgacgatgttgtcaacatatataatcagtttttactaagctacgagcaactctattagctttttctaataag |
490 |
Q |
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| T |
38311994 |
gtccaccaatttgtcattcagatcaatttgacgatgttgtcaacatatataatcaatttttactaagctacgagcaactctattagctttttctaataag |
38312093 |
T |
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| Q |
491 |
tcacacactatatatttcttgagaaaacaattccattcacccattatctaatggtggaagagaaactgctgctgttggcagcagcacgacttgttcagga |
590 |
Q |
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| T |
38312094 |
tcgcacactatatatttcttgagaaaacaattccattcacccattatctaatggtggaagagcaactgctgctgttggcagcagcacaacttgttcagga |
38312193 |
T |
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| Q |
591 |
cctaaaactgtaagaagatggttgaaagaaagaggaaagcaaaatacataatgctcagcagcacactaccattactgtggctgctttagcttccattgtg |
690 |
Q |
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| T |
38312194 |
cctaaaactgtaagaagatggttgaaagaaagaggaaagcaaaatacataatgctcagcagcacactactattactgtggctgctttagcttccattgtg |
38312293 |
T |
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| Q |
691 |
gccacaacatcagcctcgtc |
710 |
Q |
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| T |
38312294 |
gccacaacagcagcctcgtc |
38312313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 515 - 619
Target Start/End: Original strand, 38268316 - 38268420
Alignment:
| Q |
515 |
aaacaattccattcacccattatctaatggtggaagagaaactgctgctgttggcagcagcacgacttgttcaggacctaaaactgtaagaagatggttg |
614 |
Q |
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||||||||||||||||||||||| ||||||||||||| || ||| | |||||||| | ||||| ||||||||||||||||||||||| |||| |||||| |
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| T |
38268316 |
aaacaattccattcacccattattcaatggtggaagagcaagtgccggtgttggcaacggcacggcttgttcaggacctaaaactgtaggaaggtggttg |
38268415 |
T |
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| Q |
615 |
aaaga |
619 |
Q |
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||||| |
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| T |
38268416 |
aaaga |
38268420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 298 - 475
Target Start/End: Original strand, 38268072 - 38268246
Alignment:
| Q |
298 |
atatgcaacaggatgtgtcgccattaacatcagatagaatatctctcagcagcgagcctttgaatcatggtggtgcattagccggatcagggagtccacc |
397 |
Q |
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| T |
38268072 |
atatgtaacaggaagtgtctccgttaacatcaggtagattatctcacagcagcgaacctttgaatggtggcagttcattaactggaacagacagtcca-- |
38268169 |
T |
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| Q |
398 |
aatttgtcattcagatcaatttgacgatgttgtcaacatatataatcagtttttactaagctacgagcaactctatta |
475 |
Q |
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|||| |||||||||| ||||||||||||||||||| | || ||| | ||||||||| |||| || ||||||||||| |
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| T |
38268170 |
-atttctcattcagatgaatttgacgatgttgtcaaggtttacaataaatttttactacgctatgaacaactctatta |
38268246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 675
Target Start/End: Original strand, 38268434 - 38268493
Alignment:
| Q |
616 |
aagaaagaggaaagcaaaatacataatgctcagcagcacactaccattactgtggctgct |
675 |
Q |
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| T |
38268434 |
aagaaagaagaaagcagaacacaaaatgctcagctgcacgctactattactgtggctgct |
38268493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 580 - 623
Target Start/End: Complemental strand, 31707711 - 31707668
Alignment:
| Q |
580 |
cttgttcaggacctaaaactgtaagaagatggttgaaagaaaga |
623 |
Q |
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| T |
31707711 |
cttgttcaggacctaaaacagtaggaagatggttgaaagaaaga |
31707668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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