View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4634-Insertion-6 (Length: 705)

Name: NF4634-Insertion-6
Description: NF4634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4634-Insertion-6
NF4634-Insertion-6
[»] chr6 (15 HSPs)
chr6 (154-701)||(7564329-7564876)
chr6 (11-108)||(7564233-7564330)
chr6 (575-702)||(1470922-1471049)
chr6 (575-702)||(1459540-1459667)
chr6 (563-689)||(176272-176398)
chr6 (573-676)||(370782-370885)
chr6 (564-666)||(1442096-1442198)
chr6 (329-398)||(176599-176668)
chr6 (574-670)||(1453838-1453934)
chr6 (574-670)||(1465530-1465626)
chr6 (363-402)||(370569-370608)
chr6 (578-628)||(9819831-9819881)
chr6 (361-402)||(1459314-1459355)
chr6 (578-627)||(9703888-9703937)
chr6 (571-623)||(24417481-24417533)
[»] chr7 (2 HSPs)
chr7 (574-682)||(3927004-3927112)
chr7 (568-628)||(1078152-1078212)
[»] chr4 (2 HSPs)
chr4 (575-667)||(55419742-55419834)
chr4 (573-623)||(22672124-22672174)
[»] scaffold0044 (1 HSPs)
scaffold0044 (566-633)||(89137-89204)
[»] chr2 (8 HSPs)
chr2 (568-617)||(6538844-6538893)
chr2 (574-623)||(7160752-7160801)
chr2 (574-623)||(7168688-7168737)
chr2 (566-623)||(7156182-7156239)
chr2 (566-617)||(7174363-7174414)
chr2 (566-633)||(33026651-33026718)
chr2 (566-636)||(11237684-11237754)
chr2 (575-623)||(36577370-36577418)
[»] chr3 (20 HSPs)
chr3 (573-628)||(2442038-2442093)
chr3 (576-633)||(2456243-2456300)
chr3 (568-633)||(9608336-9608401)
chr3 (575-623)||(3754604-3754652)
chr3 (566-633)||(2631351-2631418)
chr3 (573-623)||(4142131-4142181)
chr3 (573-623)||(4157941-4157991)
chr3 (576-633)||(771499-771556)
chr3 (566-631)||(7324421-7324486)
chr3 (576-631)||(2644362-2644417)
chr3 (566-633)||(9561975-9562042)
chr3 (578-629)||(13498222-13498273)
chr3 (573-623)||(803215-803265)
chr3 (573-623)||(1007465-1007515)
chr3 (573-623)||(1022493-1022543)
chr3 (573-623)||(2696729-2696779)
chr3 (575-623)||(2459279-2459327)
chr3 (580-628)||(2502147-2502195)
chr3 (576-628)||(2659152-2659204)
chr3 (568-628)||(12133096-12133156)
[»] chr5 (4 HSPs)
chr5 (575-623)||(11081817-11081865)
chr5 (573-623)||(23766859-23766909)
chr5 (573-623)||(23816707-23816757)
chr5 (578-631)||(20292991-20293044)
[»] chr1 (1 HSPs)
chr1 (566-627)||(51381445-51381506)


Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 154 - 701
Target Start/End: Original strand, 7564329 - 7564876
Alignment:
Q  154 atcaatggaatctgtgaatgcaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca 253  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7564329 atcaatggaatctgtgaatggaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca 7564428  T
Q  254 gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacattaaataaataacacataagacgaaaacacatatggagaatctctgagacccaacatag 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7564429 gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacattaaataaataacacataagacgaaaacacatatggagaatctctgagatccaacatag 7564528  T
Q  354 caaagcgtgtaggtcaaggtgatatgagactctcaacatagacattagacgagaaatcggtaaaagcgacattttgaatccccgaaatctttacggtacc 453  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7564529 caaagcgtgtaggtcaaggtgatacgagactctcaacatagacattagaggagaaatcggtaaaagcgagattttgaatccccgaaatctttacggtacc 7564628  T
Q  454 attcttataattgtaaacatataacttaccacaaaagtcaagcaacacttggtcatcctcctcataaataaaaagcagacgtgcatagaaataatcaatg 553  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| ||| |||| ||    
T  7564629 attcttataattgtaaacatataacttaccacaaaagtcaagcaacacttggtcatcctcctcatagataaaaagcacaggtgcatagcaattatcactg 7564728  T
Q  554 aattctgtgaatggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaagga 653  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  7564729 aattctttgaatggaacactgaacaatttagtccaagaatccttgtttccataatccttcataacccaaatattcaaaaaagttgtagtgtgagcaagga 7564828  T
Q  654 cgcataagcaatccctacaaacccctaagctaaagtaacgcagacgtt 701  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||    
T  7564829 cccataagcaatccctacaaacccctaagctaaagtaacgcagacgtt 7564876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 7564233 - 7564330
Alignment:
Q  11 gtgtcgtgtttgtgcttcatagcaagaaaaagcaggagcataagcataagcataaccacctctcattaattagcaagataaaggttaatagtatcaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7564233 gtgtcgtgtttgtgcttcatagcaagaaaaagcaggagcataagcataagcataaccacctctcattaagtagcaagataaaggttaatagtatcaat 7564330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 575 - 702
Target Start/End: Original strand, 1470922 - 1471049
Alignment:
Q  575 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaa 674  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| | | || |||||||||| ||||||| |||||||| |||    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaa 1471021  T
Q  675 cccctaagctaaagtaacgcagacgttc 702  Q
    |||| |||||||||| ||||||| ||||    
T  1471022 cccccaagctaaagttacgcagaggttc 1471049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 575 - 702
Target Start/End: Original strand, 1459540 - 1459667
Alignment:
Q  575 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaa 674  Q
    ||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| | | || |||||||||||||||||| |||||||| |||    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaa 1459639  T
Q  675 cccctaagctaaagtaacgcagacgttc 702  Q
    |||| |||||||||| | ||||| ||||    
T  1459640 cccccaagctaaagttatgcagaggttc 1459667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 563 - 689
Target Start/End: Complemental strand, 176398 - 176272
Alignment:
Q  563 aatggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagc 662  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||||||||||   || |||||||||||||||| ||    
T  176398 aatggaagagtgaacaatttagtccaagaatctttatttccataatcattcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggc 176299  T
Q  663 aatccctacaaacccctaagctaaagt 689  Q
    |||||||| ||||||| ||||| ||||    
T  176298 aatccctagaaacccccaagctgaagt 176272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 573 - 676
Target Start/End: Original strand, 370782 - 370885
Alignment:
Q  573 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctaca 672  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||   ||| ||||||| |||| |||||||||| |||||||||||||||| |    
T  370782 tgaacaatttagtccaagaatctttatttccataattcttcataacccaaacgcccataaaagttttagtctgagcaaggatgcataagcaatccctaga 370881  T
Q  673 aacc 676  Q
    ||||    
T  370882 aacc 370885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 564 - 666
Target Start/End: Original strand, 1442096 - 1442198
Alignment:
Q  564 atggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagca 663  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||| ||||    |||||||||||| |||||||||    
T  1442096 atggaacagtgaacaatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagttccgttttgagcaaggatgcataagca 1442195  T
Q  664 atc 666  Q
    |||    
T  1442196 atc 1442198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 176668 - 176599
Alignment:
Q  329 ggagaatctctgagacccaacatagcaaagcgtgtaggtcaaggtgatatgagactctcaacatagacat 398  Q
    ||||||||| ||||| ||| || ||||||||  |||||||||||||||||||||||||||||||||||||    
T  176668 ggagaatctttgagagccagcagagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat 176599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 670
Target Start/End: Original strand, 1453838 - 1453934
Alignment:
Q  574 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcccta 670  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |     |||  |||||||||| ||||||||||||||||    
T  1453838 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatcccta 1453934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 670
Target Start/End: Original strand, 1465530 - 1465626
Alignment:
Q  574 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcccta 670  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |     |||  |||||||||| ||||||||||||||||    
T  1465530 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatcccta 1465626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 370569 - 370608
Alignment:
Q  363 taggtcaaggtgatatgagactctcaacatagacattaga 402  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  370569 taggtcaaggtgatatgagactctcaacgtagacattaga 370608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 628
Target Start/End: Original strand, 9819831 - 9819881
Alignment:
Q  578 aatttagtccaagaatccttatttccataatccttcataacccaaatatcc 628  Q
    |||||||||||||| ||  |||||||||| |||||||||| ||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaatatcc 9819881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 402
Target Start/End: Original strand, 1459314 - 1459355
Alignment:
Q  361 tgtaggtcaaggtgatatgagactctcaacatagacattaga 402  Q
    |||||||||||||||||||||||||||  | |||||||||||    
T  1459314 tgtaggtcaaggtgatatgagactctctgcgtagacattaga 1459355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 627
Target Start/End: Original strand, 9703888 - 9703937
Alignment:
Q  578 aatttagtccaagaatccttatttccataatccttcataacccaaatatc 627  Q
    |||||||||||| ||||  |||||||||| |||||||||| |||||||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaatatc 9703937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 571 - 623
Target Start/End: Original strand, 24417481 - 24417533
Alignment:
Q  571 actgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    |||| |||||||||||||||| || ||||||||||| || ||||||| |||||    
T  24417481 actgtacaatttagtccaagattctttatttccatattctttcataatccaaa 24417533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 574 - 682
Target Start/End: Complemental strand, 3927112 - 3927004
Alignment:
Q  574 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaa 673  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| ||||||  ||| | | ||||||| || ||||||||| || ||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaatacccaacaaagtttcagtgtaaacaaggacacacaagcaatccttagaa 3927013  T
Q  674 acccctaag 682  Q
    |||||||||    
T  3927012 acccctaag 3927004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 628
Target Start/End: Original strand, 1078152 - 1078212
Alignment:
Q  568 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 628  Q
    |||| |||||||||||||||| || ||  |||||||||| |||||||||||||||| ||||    
T  1078152 aacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatcc 1078212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 575 - 667
Target Start/End: Complemental strand, 55419834 - 55419742
Alignment:
Q  575 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcc 667  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||   | || ||||||| ||||||||||||||||    
T  55419834 aacaatttagtccaagaatctttatttccataaaccttcataagccagatatccaaaaaagaattggtgtgagcaacgacgcataagcaatcc 55419742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 22672124 - 22672174
Alignment:
Q  573 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  22672124 tgaacaatttagtccaagattccttatttccatattccttcattacccaaa 22672174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 566 - 633
Target Start/End: Complemental strand, 89204 - 89137
Alignment:
Q  566 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 633  Q
    |||||| || |||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||    
T  89204 ggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaa 89137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 568 - 617
Target Start/End: Complemental strand, 6538893 - 6538844
Alignment:
Q  568 aacactgaacaatttagtccaagaatccttatttccataatccttcataa 617  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  6538893 aacactgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 574 - 623
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  574 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 574 - 623
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  574 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 623
Target Start/End: Original strand, 7156182 - 7156239
Alignment:
Q  566 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    ||||||| ||||||||||| ||||||||| | ||||||||| |||||||||| |||||    
T  7156182 ggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaa 7156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 617
Target Start/End: Original strand, 7174363 - 7174414
Alignment:
Q  566 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataa 617  Q
    ||||||| ||||||| ||||||||||||| | ||||||||| ||||||||||    
T  7174363 ggaacacggaacaatctagtccaagaatcttgatttccatattccttcataa 7174414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 633
Target Start/End: Complemental strand, 33026718 - 33026651
Alignment:
Q  566 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 633  Q
    ||||||| | ||||| |||||||||| |  ||||||||||| | |||||||||||||| |||||||||    
T  33026718 ggaacacggtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaa 33026651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 636
Target Start/End: Complemental strand, 11237754 - 11237684
Alignment:
Q  566 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagt 636  Q
    ||||||| |||||||||||||||||  ||  |||||||||| |||| ||||| ||||| ||| ||||||||    
T  11237754 ggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaaagt 11237684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 575 - 623
Target Start/End: Complemental strand, 36577418 - 36577370
Alignment:
Q  575 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    ||||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaa 36577370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 573 - 628
Target Start/End: Complemental strand, 2442093 - 2442038
Alignment:
Q  573 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 628  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||||| ||||    
T  2442093 tgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 2442038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 576 - 633
Target Start/End: Complemental strand, 2456300 - 2456243
Alignment:
Q  576 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 633  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||| |||| ||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaacatcccaaaa 2456243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 633
Target Start/End: Original strand, 9608336 - 9608401
Alignment:
Q  568 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 633  Q
    ||||||| | |||||||||||||||||  |||||||||| |||||||||||||||| ||| |||||    
T  9608336 aacactgtataatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaa 9608401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 623
Target Start/End: Complemental strand, 3754652 - 3754604
Alignment:
Q  575 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaa 3754604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 566 - 633
Target Start/End: Complemental strand, 2631418 - 2631351
Alignment:
Q  566 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 633  Q
    ||||||||| |||||||||||||||| || | ||||||||| |||||||||| ||||| || ||||||    
T  2631418 ggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaacattcaaaaa 2631351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 4142131 - 4142181
Alignment:
Q  573 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4142131 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 4157941 - 4157991
Alignment:
Q  573 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4157941 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 633
Target Start/End: Original strand, 771499 - 771556
Alignment:
Q  576 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 633  Q
    |||||||||||||||| ||  |||||||||| |||||||||||||||| |||| ||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatcccaaaa 771556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 631
Target Start/End: Original strand, 7324421 - 7324486
Alignment:
Q  566 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 631  Q
    ||||||||  |||||||||||||||| || |||||||| || |||||||||| ||||| |||||||    
T  7324421 ggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatccaaa 7324486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 631
Target Start/End: Original strand, 2644362 - 2644417
Alignment:
Q  576 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 631  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| |||||||    
T  2644362 acaatttagtccaagactcttgatttccatactccttcataatccaaacatccaaa 2644417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 633
Target Start/End: Original strand, 9561975 - 9562042
Alignment:
Q  566 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 633  Q
    ||||||||| | |||||||||||||| || | ||||||||| || ||||||| ||||| |||||||||    
T  9561975 ggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatccaaaaa 9562042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 629
Target Start/End: Complemental strand, 13498273 - 13498222
Alignment:
Q  578 aatttagtccaagaatccttatttccataatccttcataacccaaatatcca 629  Q
    |||||||||||||| || ||||||||||| |||||||||| ||||| |||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatcca 13498222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 803215 - 803265
Alignment:
Q  573 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    ||||||| ||||||||||| || ||||||||||| || |||||||||||||    
T  803215 tgaacaacttagtccaagactctttatttccatattctttcataacccaaa 803265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 623
Target Start/End: Complemental strand, 1007515 - 1007465
Alignment:
Q  573 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    |||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1007515 tgaacaatttagtccaggactcgttatttccatattccttcattacccaaa 1007465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 623
Target Start/End: Complemental strand, 1022543 - 1022493
Alignment:
Q  573 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    |||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1022543 tgaacaatttagtccatgactcgttatttccatattccttcattacccaaa 1022493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 2696729 - 2696779
Alignment:
Q  573 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    ||||||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  2696729 tgaacaatttaatccaagactctttatttccatattccttcataatccaaa 2696779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 575 - 623
Target Start/End: Complemental strand, 2459327 - 2459279
Alignment:
Q  575 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    |||||||| |||||||| || ||||||||||| |||||||||| |||||    
T  2459327 aacaattttgtccaagactctttatttccatattccttcataatccaaa 2459279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 580 - 628
Target Start/End: Complemental strand, 2502195 - 2502147
Alignment:
Q  580 tttagtccaagaatccttatttccataatccttcataacccaaatatcc 628  Q
    |||||||||| | |||||||||||||| |||||||||| ||||| ||||    
T  2502195 tttagtccaaaactccttatttccatactccttcataatccaaacatcc 2502147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 576 - 628
Target Start/End: Original strand, 2659152 - 2659204
Alignment:
Q  576 acaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 628  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| ||||    
T  2659152 acaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 2659204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 628
Target Start/End: Complemental strand, 12133156 - 12133096
Alignment:
Q  568 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 628  Q
    |||| |||||||||||||||| || ||  |||||||||| ||| |||||||||||| ||||    
T  12133156 aacattgaacaatttagtccacgactctctatttccatactccctcataacccaaacatcc 12133096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 623
Target Start/End: Complemental strand, 11081865 - 11081817
Alignment:
Q  575 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaa 11081817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 23766859 - 23766909
Alignment:
Q  573 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23766859 tgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23766909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 23816707 - 23816757
Alignment:
Q  573 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 623  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23816707 tgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23816757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 631
Target Start/End: Complemental strand, 20293044 - 20292991
Alignment:
Q  578 aatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 631  Q
    |||||||||||||| || ||| ||||||| |||||||||| ||||| |||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatccaaa 20292991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 627
Target Start/End: Original strand, 51381445 - 51381506
Alignment:
Q  566 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatc 627  Q
    |||| ||||||||||||||||||||| || | ||||||||| || ||||||| |||||||||    
T  51381445 ggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatc 51381506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University