View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4634-Insertion-7 (Length: 591)

Name: NF4634-Insertion-7
Description: NF4634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4634-Insertion-7
NF4634-Insertion-7
[»] chr6 (6 HSPs)
chr6 (8-504)||(786962-787458)
chr6 (36-200)||(9664639-9664803)
chr6 (29-199)||(3074909-3075082)
chr6 (503-591)||(786834-786922)
chr6 (29-152)||(21146819-21146941)
chr6 (17-53)||(8655815-8655851)
[»] chr4 (3 HSPs)
chr4 (28-199)||(55849418-55849590)
chr4 (15-174)||(55851978-55852150)
chr4 (201-249)||(33722080-33722128)
[»] chr1 (4 HSPs)
chr1 (53-199)||(20225515-20225661)
chr1 (8-149)||(20226799-20226942)
chr1 (133-198)||(20226953-20227018)
chr1 (13-50)||(29849971-29850008)
[»] chr3 (9 HSPs)
chr3 (16-199)||(20868675-20868860)
chr3 (29-166)||(27462140-27462277)
chr3 (29-199)||(24595209-24595375)
chr3 (29-199)||(20871313-20871490)
chr3 (78-199)||(51308791-51308912)
chr3 (16-199)||(51306330-51306512)
chr3 (124-199)||(35610797-35610872)
chr3 (29-83)||(27462290-27462344)
chr3 (8-42)||(52737808-52737842)
[»] chr8 (11 HSPs)
chr8 (16-171)||(35416076-35416231)
chr8 (35-204)||(12062760-12062931)
chr8 (35-199)||(369263-369425)
chr8 (29-168)||(31909100-31909236)
chr8 (16-119)||(3788487-3788591)
chr8 (128-199)||(4676130-4676201)
chr8 (128-199)||(4678075-4678146)
chr8 (55-178)||(3785816-3785937)
chr8 (17-108)||(19472471-19472563)
chr8 (17-108)||(19543396-19543488)
chr8 (17-108)||(19589208-19589300)
[»] chr2 (1 HSPs)
chr2 (29-199)||(26608008-26608177)
[»] chr5 (3 HSPs)
chr5 (58-199)||(27172855-27172995)
chr5 (128-199)||(39040636-39040707)
chr5 (17-50)||(26873149-26873182)
[»] chr7 (2 HSPs)
chr7 (35-178)||(2577001-2577142)
chr7 (17-50)||(41830317-41830350)


Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 8 - 504
Target Start/End: Complemental strand, 787458 - 786962
Alignment:
Q  8 accatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgataca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  787458 accatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagtttggaaaactattgtattgatgatacttgaaatgataca 787359  T
Q  108 agaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaatatttactgt 207  Q
    ||||||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787358 agaatgagaaagatcggtacaaatgagtcaatcatatgacttatatagtaactaaactagtgtcctaactacctatatcattattcttaatatttactgt 787259  T
Q  208 ttcaattaatattccactttctaagatgttattgtgtttcatttcataaatttattggtagtttattacattgttgtttagttcttccagctttttcttc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787258 ttcaattaatattccactttctaagatgttattgtgtttcatttcataaatttattggtagtttattacattgttgtttagttcttccagctttttcttc 787159  T
Q  308 cttttctcagaataggcaaaactcattgttcatttttcaagaaaatgactaatccctcattttgtatagaatgattatataagcaaaatctaacttctct 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787158 cttttctcagaataggcaaaactcattgttcatttttcaagaaaatgactaatccctcattttgtatagaatgattatataagcaaaatctaacttctct 787059  T
Q  408 atactatccctctcctttagttttatataaattctaatgaccaaatatattagccattgagggtgatttagataacaaaattaattttttattgagt 504  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787058 atactatccctctcctttagttttatataaattctagtgaccaaatatattagccattgagggtgatttagataacaaaattaattttttattgagt 786962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 36 - 200
Target Start/End: Original strand, 9664639 - 9664803
Alignment:
Q  36 aaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagt 135  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| ||||||  ||||||||||||    
T  9664639 aaacatggcatccatggatatagagagaaaagcttgaaaaactattgtattgattatagttgaaatgatacaagaatgaaaaagataggtacaaatgagt 9664738  T
Q  136 caaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaatat 200  Q
    ||||||||| |||||||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  9664739 caaccatgtgacttatatagtaactaaactagtgtcctaattaactatatcatcattcttaatat 9664803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 3075082 - 3074909
Alignment:
Q  29 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtatt-gatgatacttgaaatgatacaagaatgagaaagatcagtac 127  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||  ||||||   |||    
T  3075082 tgttagaaaacatggcatccatggatatagagagaaaagcttggaaaactattgtatttgatgatagttgaaatgatataagaatggaaaagatagatac 3074983  T
Q  128 aaatgagtcaaccatgtaacttatata--gtaactaaactagtgtcctaactacctatatcattattcttaata 199  Q
    ||||||| ||||||||| | |||||||  |||||||||||||||||||||||| ||||||||||||||||||||    
T  3074982 aaatgagacaaccatgtgatttatatatagtaactaaactagtgtcctaactaactatatcattattcttaata 3074909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 503 - 591
Target Start/End: Complemental strand, 786922 - 786834
Alignment:
Q  503 gtaatttaatcaatcttggcttatatttcatttcacatttagaatctgacaagggttttgttctaacaatttggacgttgatgactcta 591  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  786922 gtaatttaatcaatcttggcttatatttcatttcacatttagaatctgacaagggttttgttctaacaattttgacgttgatgactcta 786834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 21146819 - 21146941
Alignment:
Q  29 tgttaggaaacatgtcatccatagatatagagagaaaag-cttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtac 127  Q
    ||||| ||||||||||||||||  | ||||||||||||  ||| ||||| |||||||||||  ||| |||||||||||||||||||| |||||   ||||    
T  21146819 tgttaagaaacatgtcatccatgaaaatagagagaaaaaacttagaaaattattgtattgaaaatagttgaaatgatacaagaatga-aaagagaggtac 21146917  T
Q  128 aaatgagtcaaccatgtaacttata 152  Q
    ||||||||||| ||||| |||||||    
T  21146918 aaatgagtcaa-catgtgacttata 21146941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 8655815 - 8655851
Alignment:
Q  17 gctctgataccatgttaggaaacatgtcatccataga 53  Q
    |||||||||||||||||||||||||| ||||||||||    
T  8655815 gctctgataccatgttaggaaacatggcatccataga 8655851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 55849418 - 55849590
Alignment:
Q  28 atgttaggaaacatgtcatccatagatatagagagaaaagcttgg-aaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagta 126  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||||  |||    
T  55849418 atgttaggaaacatggcatccatggatatagagagaaaagcttgggaaaactattgtattgatgatagttgaaatgatacaagaatggaaaagataggta 55849517  T
Q  127 caaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 199  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  55849518 caaatgagtcaaccatgtgacttatatagtaactgaactagtgtcctaactaactatatcattattcttaata 55849590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 55851978 - 55852150
Alignment:
Q  15 ttgctctgataccatgttaggaaacatgtcatccatagatatagagaga----aaagcttggaaaa---------ctattgtattgatgatacttgaaat 101  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||||||||    |||||||||||||         ||||||||||||||||| |||||||    
T  55851978 ttgctctgatacgatgttaggaaacatggcatccatggatatagagagagagaaaagcttggaaaaactattgtactattgtattgatgatagttgaaat 55852077  T
Q  102 gatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtccta 174  Q
    ||||||||||||  |||||| | |||||||||||||||||||| | ||||||||||||||| |||||||||||    
T  55852078 gatacaagaatgtaaaagataactacaaatgagtcaaccatgttagttatatagtaactaatctagtgtccta 55852150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 33722128 - 33722080
Alignment:
Q  201 ttactgtttcaattaatattccactttctaagatgttattgtgtttcat 249  Q
    |||||||||||||| |||||||||||| |||| ||||| ||||||||||    
T  33722128 ttactgtttcaattgatattccactttgtaagctgttagtgtgtttcat 33722080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 53 - 199
Target Start/End: Original strand, 20225515 - 20225661
Alignment:
Q  53 atatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttata 152  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||||  ||||||| ||||||||||||| |||||||    
T  20225515 atatagagagaaaagcttgcaaaactattgtattgatgataattgaaatgatacaagaatggaaaagataggtacaaaagagtcaaccatgtgacttata 20225614  T
Q  153 tagtaactaaactagtgtcctaactacctatatcattattcttaata 199  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  20225615 tagtaactaaactagtgtcctaactaactatatcattattcttaata 20225661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 20226799 - 20226942
Alignment:
Q  8 accatatttgctctgataccatgttaggaaacatgtcatccatagatatagag--agaaaagcttggaaaactattgtattgatgatacttgaaatgata 105  Q
    |||| ||| |||||||||||||||||||||||| | ||| ||| |||||||||  ||||||| ||| ||||||||||||||||||||| |||||||||||    
T  20226799 accagattagctctgataccatgttaggaaacacggcattcatggatatagagagagaaaagtttgaaaaactattgtattgatgataattgaaatgata 20226898  T
Q  106 caagaatgagaaagatcagtacaaatgagtcaaccatgtaactt 149  Q
    ||||||||| ||||||  ||||||| ||||||||||||||||||    
T  20226899 caagaatgaaaaagataggtacaaaagagtcaaccatgtaactt 20226942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 20226953 - 20227018
Alignment:
Q  133 agtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaat 198  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  20226953 agtcaaccatatgacttatatagtaactaaactagtgtcctagctaactatatcattattcttaat 20227018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 29849971 - 29850008
Alignment:
Q  13 atttgctctgataccatgttaggaaacatgtcatccat 50  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  29849971 atttgctctgataccatgttatgaaacatggcatccat 29850008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 9e-53; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 20868860 - 20868675
Alignment:
Q  16 tgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaa-atgatacaagaatga 114  Q
    ||||||||||||||||| ||||||||| |||||||  | | |||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||    
T  20868860 tgctctgataccatgttgggaaacatggcatccatgaaaagagagagaaaagcttagaaaactattgtattgatgatagttgaacataatacaagaatga 20868761  T
Q  115 gaaagatcagtacaaatgagtcaaccatgtaacttatatagtaact-aaactagtgtcctaactacctatatcattattcttaata 199  Q
     ||||||  |||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||    
T  20868760 aaaagataggtacaaataagtcaaccatgtgacttatatagtaactaaaactagtatcctaactaactatatcattattcttaata 20868675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 27462277 - 27462140
Alignment:
Q  29 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtaca 128  Q
    |||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||  |||||    
T  27462277 tgttagtaaacatggcatccatggatatagagagaaaagcttggaaaactattgtattgattatagttgaaatgatacaagaatgaaaaagataggtaca 27462178  T
Q  129 aatgagtcaaccatgtaacttatatagtaactaaacta 166  Q
    |||||||||||||| | |||||||||||||||||||||    
T  27462177 aatgagtcaaccatatgacttatatagtaactaaacta 27462140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 24595375 - 24595209
Alignment:
Q  29 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcagtac 127  Q
    ||||||||||||   |||||||  | |||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||| |||||| |||||    
T  24595375 tgttaggaaacacaacatccatgaagatagagagaaaagcttagaaa-ctattgtattgatgatagttgaaaatgatacaagaatgaaaaagattagtac 24595277  T
Q  128 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 199  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  24595276 aaatgagtcaaccatgtgacttatatagtaactaaactagtgtcctaa----ctatatcattattcttaata 24595209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 20871490 - 20871313
Alignment:
Q  29 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattg-----atgatacttgaaa-tgatacaagaatgagaaagatc 122  Q
    |||| ||||||||| |||||||  | | |||||||||||||| ||||||||||||||||     |||||| |||||| | |||||||||||| ||||||     
T  20871490 tgttgggaaacatgacatccatgaaaagagagagaaaagcttagaaaactattgtattgtattgatgatagttgaaaataatacaagaatgaaaaagata 20871391  T
Q  123 agtacaaatgagtcaaccatgtaacttatatagtaact-aaactagtgtcctaactacctatatcattattcttaata 199  Q
     ||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||    
T  20871390 ggtacaaatgagtcaaccatgtgacttatatagtaactaaaactagtatcctaactaactatatcatcattcttaata 20871313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 51308912 - 51308791
Alignment:
Q  78 tattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaact 177  Q
    |||||||||||| ||| |||||||||||||||||| | | |||| |||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |    
T  51308912 tattgtattgataatagttgaaatgatacaagaataaaagagattagtacaaatgagtcaaccatgtgacttatatagtaactacactagcgtcctaatt 51308813  T
Q  178 acctatatcattattcttaata 199  Q
    | ||||||||||||||||||||    
T  51308812 aactatatcattattcttaata 51308791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 51306512 - 51306330
Alignment:
Q  16 tgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaa-gcttggaaaactattgtattgatgatacttgaaatgatacaagaatga 114  Q
    |||||||||||||||||  |||||||| |||||||  | |||||||||||| |||| ||||  |||||||||||| ||| || ||||||||||| ||| |    
T  51306512 tgctctgataccatgttgagaaacatgacatccatgaaaatagagagaaaaagcttagaaat-tattgtattgataatagttaaaatgatacaaaaataa 51306414  T
Q  115 gaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 199  Q
     | |||| |||| || |||||||||||| ||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||    
T  51306413 aagagattagtataa-tgagtcaaccatataagttatatagtaactacactagtgtcctaattaactatatcattattcttaata 51306330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 35610872 - 35610797
Alignment:
Q  124 gtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 199  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||  |||||||| |||||| |||||||||||||    
T  35610872 gtacaaatgagtcaaccttgtgacttatatagtaactaaactagtaccctaactaactatattattattcttaata 35610797  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 27462344 - 27462290
Alignment:
Q  29 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgt 83  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  27462344 tgttagtaaacatggcatccatggatatagagagaaaagcttggaaaactattgt 27462290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 52737808 - 52737842
Alignment:
Q  8 accatatttgctctgataccatgttaggaaacatg 42  Q
    |||| ||||||||||||||||||||||||||||||    
T  52737808 accagatttgctctgataccatgttaggaaacatg 52737842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 4e-49; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 35416076 - 35416231
Alignment:
Q  16 tgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgag 115  Q
    |||||||||||||||||| |||||||| |||||||| | ||||||||||||||||| |||||||||||||| ||| || |||||||||||||| |||||     
T  35416076 tgctctgataccatgttaagaaacatggcatccataaaaatagagagaaaagcttgaaaaactattgtattaatggtagttgaaatgatacaataatgaa 35416175  T
Q  116 aaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtc 171  Q
     ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  35416176 gaagataagtacaaatgagtcaaccatgtgacttatatagtcactaaactagtgtc 35416231  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 12062931 - 12062760
Alignment:
Q  35 gaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcagtacaaatga 133  Q
    |||||||| |||||||  | |||||||||||||||| |||||||||| | ||||||||  |||||| | |||||||||||| | |  |  ||||||||||    
T  12062931 gaaacatggcatccatgaaaatagagagaaaagcttagaaaactattctcttgatgatggttgaaaataatacaagaatgaaagatgtgggtacaaatga 12062832  T
Q  134 gtcaaccatgtaacttatatagtaact-aaactagtgtcctaactacctatatcattattcttaatatttac 204  Q
    ||||||||||| ||||||||||||||| |||||||| || |||||| |||||||||||||||||||| ||||    
T  12062831 gtcaaccatgtgacttatatagtaactaaaactagtatcttaactaactatatcattattcttaatagttac 12062760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 35 - 199
Target Start/End: Complemental strand, 369425 - 369263
Alignment:
Q  35 gaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgag 134  Q
    |||||||| |||||||  | ||| |||||||| |||  | ||||||||||||||||||| |||||| ||||||| ||| | | ||||| |||||||| ||    
T  369425 gaaacatgacatccatgaaaataaagagaaaaactt--acaactattgtattgatgatagttgaaaagatacaaaaataaaagagatcggtacaaattag 369328  T
Q  135 tcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 199  Q
     ||||||| | |||||| |||||||||||||| | | ||||||| |||||| |||||||||||||    
T  369327 ccaaccatatgacttatttagtaactaaactactattctaactaactatattattattcttaata 369263  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 31909100 - 31909236
Alignment:
Q  29 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtaca 128  Q
    |||||||||||||| |||||||  | ||||||||||||||||  ||| ||||||||||||||||| |||||| ||||||| ||||| | |||   |||||    
T  31909100 tgttaggaaacatg-catccatgaaaatagagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtaca 31909197  T
Q  129 aatgagtcaaccatgtaacttatatagtaactaaactagt 168  Q
    |||||||||| | ||| ||||||||||| |||||||||||    
T  31909198 aatgagtcaa-cttgtgacttatatagtgactaaactagt 31909236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 3788487 - 3788591
Alignment:
Q  16 tgctctgataccatgttaggaaacatgtcatccatagatatagagagaa-aagcttggaaaactattgtattgatgatacttgaaatgatacaagaatga 114  Q
    |||||||||||||||||  |||||||| |||||||  | |||||||||| ||| || ||||| |||||||||||| ||| ||||||||||||||||||||    
T  3788487 tgctctgataccatgttgagaaacatggcatccatgaaaatagagagaagaagtttagaaaattattgtattgataatagttgaaatgatacaagaatga 3788586  T
Q  115 gaaag 119  Q
     ||||    
T  3788587 aaaag 3788591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 4676201 - 4676130
Alignment:
Q  128 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 199  Q
    ||||||||||||| ||| |||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  4676201 aaatgagtcaaccctgtgacttatatagtaactaaactagtactctaactaactatatcattattcttaata 4676130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 4678146 - 4678075
Alignment:
Q  128 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 199  Q
    ||||||||||||| ||| |||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  4678146 aaatgagtcaaccttgtgacttatatagtaactaaactagtactctaactaactatatcattattcttaata 4678075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 178
Target Start/End: Original strand, 3785816 - 3785937
Alignment:
Q  55 atagagagaa-aagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatat 153  Q
    |||||||||| |||||| | ||| |||||||||||| ||| |||||||||||||||||| | |||| | | |||||||||||||| | ||| ||||||||    
T  3785816 atagagagaagaagcttaggaaattattgtattgataatagttgaaatgatacaagaataaaaaag-tga-tacaaatgagtcaa-cttgtgacttatat 3785912  T
Q  154 agtaactaaactagtgtcctaacta 178  Q
    ||| |||| | ||||  ||||||||    
T  3785913 agtgactatagtagtaccctaacta 3785937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 19472471 - 19472563
Alignment:
Q  17 gctctgataccatgttaggaaacatgtcatccatagatatagagag-aaaagcttggaaaactattgtattgatgatacttgaaatgatacaa 108  Q
    ||||||||||||||||  |||||||| |||||||  | |||||||| ||||||||   ||| |||| ||||||  ||| ||||||||||||||    
T  19472471 gctctgataccatgttgagaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttgaaatgatacaa 19472563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 19543396 - 19543488
Alignment:
Q  17 gctctgataccatgttaggaaacatgtcatccatagatatagagag-aaaagcttggaaaactattgtattgatgatacttgaaatgatacaa 108  Q
    ||||||||||||||||  |||||||| |||||||  | |||||||| ||||||||   ||| |||| ||||||  ||| ||||||||||||||    
T  19543396 gctctgataccatgttgagaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttgaaatgatacaa 19543488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 19589300 - 19589208
Alignment:
Q  17 gctctgataccatgttaggaaacatgtcatccatagatatagagag-aaaagcttggaaaactattgtattgatgatacttgaaatgatacaa 108  Q
    ||||||||||||||||  |||||||| |||||||  | |||||||| ||||||||   ||| |||| ||||||  ||| ||||||||||||||    
T  19589300 gctctgataccatgttgagaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttgaaatgatacaa 19589208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 26608008 - 26608177
Alignment:
Q  29 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcagtac 127  Q
    ||||| |||||||| |||||||  | |||||||||||||||| ||||  |||||||||||||||| |||||| |||||||||||||| ||||||  ||||    
T  26608008 tgttaagaaacatgacatccatgaaaatagagagaaaagcttagaaa--tattgtattgatgatagttgaaaatgatacaagaatgaaaaagataggtac 26608105  T
Q  128 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 199  Q
    | ||||||||||| ||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  26608106 agatgagtcaaccttgtgacttatatagtaactgaactagtatcctaactaactatatcattattcttaata 26608177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 58 - 199
Target Start/End: Original strand, 27172855 - 27172995
Alignment:
Q  58 gagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagta 157  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||  ||||||   ||||||||||||| | |  | ||||||||||||    
T  27172855 gagagaaaagcttggaaaactattctattgatgatagttgaaatgatacaagaatggaaaagatagttacaaatgagtcacctaa-tgacttatatagta 27172953  T
Q  158 actaaactagtgtcctaactacctatatcattattcttaata 199  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  27172954 actaaactagtatcctaacttactatatcattattcttaata 27172995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 39040636 - 39040707
Alignment:
Q  128 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 199  Q
    ||||||||||||| ||| |||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  39040636 aaatgagtcaaccttgtgacttatatagtaactaaactagtactctaactaactatatcattattcttaata 39040707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 26873149 - 26873182
Alignment:
Q  17 gctctgataccatgttaggaaacatgtcatccat 50  Q
    |||||||||||||||||||||||||| |||||||    
T  26873149 gctctgataccatgttaggaaacatggcatccat 26873182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 35 - 178
Target Start/End: Complemental strand, 2577142 - 2577001
Alignment:
Q  35 gaaacatgtcatccatagatatagagagaa-aagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatga 133  Q
    |||||||| |||||||  | |||||||||| |||||| ||||| |||||||||||| ||| |||||||||||||||||||| |||| | | |||||||||    
T  2577142 gaaacatggcatccatgaaaatagagagaagaagcttagaaaattattgtattgataatagttgaaatgatacaagaatgaaaaag-tga-tacaaatga 2577045  T
Q  134 gtcaaccatgtaacttatatagtaactaaactagtgtcctaacta 178  Q
    ||||| | ||| ||||||||||| |||| ||||||  ||||||||    
T  2577044 gtcaa-cttgtgacttatatagtgactatactagtaccctaacta 2577001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 41830350 - 41830317
Alignment:
Q  17 gctctgataccatgttaggaaacatgtcatccat 50  Q
    ||||| ||||||||||||||||||||||||||||    
T  41830350 gctctaataccatgttaggaaacatgtcatccat 41830317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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