View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4634-Insertion-8 (Length: 513)
Name: NF4634-Insertion-8
Description: NF4634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4634-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 2523016 - 2523297
Alignment:
| Q |
8 |
atgtaatgggcgaggaaatataattaatgtaatgcgggagaagttatttgagaatggcttggttatgtcttgtgtttagtcataatgaaataaattaatt |
107 |
Q |
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| T |
2523016 |
atgtaatgggcgtggaaatataattgatgtaatgagggagaagttatttgagaatggcttggttatgtcttgtgtttagtcataatgaaataaattaatt |
2523115 |
T |
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| Q |
108 |
gtttacactttacccacccttcccaatgattaatcgtacctgtataaattttgtgattcaaagctatgttacataaaacatgaataaatgtaaaacataa |
207 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2523116 |
gtttacactttacccacccttcccaatgattaatcctacctgtatagattttgtgattcaaagctatgttacataaaacatgaataaatgtaaaacataa |
2523215 |
T |
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| Q |
208 |
atagacggatattatcagtttctcactttctcatttggaacttgtatctgaatttgatcagatcccatgatagcctgagcag |
289 |
Q |
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| T |
2523216 |
atagacggatattatcagtttctcactttctcatttggaacttgtatctgaatttgatcagatcccatgatagcctgagcag |
2523297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 343 - 454
Target Start/End: Original strand, 2526367 - 2526478
Alignment:
| Q |
343 |
tgaaaattgaaaaagaaagaagattatgcagaacctgattctcgttgtggttagattctggcaagagaaaaagtatgaaaattgctgtatacacacacat |
442 |
Q |
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| T |
2526367 |
tgaaaattgaaaaagaaagaagattatgcagaacctgattctcgttgtggttagattctggcaagagaaaaagtatgaaaattgctgtatacacacacat |
2526466 |
T |
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| Q |
443 |
ttgcaaaaacac |
454 |
Q |
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|||||||||||| |
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| T |
2526467 |
ttgcaaaaacac |
2526478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 2536062 - 2535937
Alignment:
| Q |
145 |
acctgtataaattttgtgattcaaagctatgttacataaaacatgaataaatgtaaaacataaatagacggatattatcagtttctcactttctcatttg |
244 |
Q |
| |
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||||| |||||||||||| |||| ||||| |||| ||||||||||||||| ||||||||||| |||||||||||| | |||||||| |||||||||| |
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| T |
2536062 |
acctgcataaattttgtgcttcagagctacgttaacctaaacatgaataaatggaaaacataaattgacggatattataattttctcaccttctcatttg |
2535963 |
T |
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| Q |
245 |
gaacttgtatctgaatttgatcagat |
270 |
Q |
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| T |
2535962 |
gaacttgtatctgaatttgatcagat |
2535937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 2523604 - 2523710
Alignment:
| Q |
145 |
acctgtataaattttgtgattcaaagctatgtta-cataaaacatgaataaatgtaaaacataaatagacggatattatcagtttctcactttctcattt |
243 |
Q |
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||||| || ||||||| |||||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||||| |
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| T |
2523604 |
acctgcatgaattttgagattcaaagctacgttaacataaaacatgaataaatggaaaacataaattgacggatatttcaagtttctcaccttctcattt |
2523703 |
T |
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| Q |
244 |
ggaactt |
250 |
Q |
| |
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||||||| |
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| T |
2523704 |
ggaactt |
2523710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 2536492 - 2536439
Alignment:
| Q |
151 |
ataaattttgtgattcaaagctatgtta-cataaaacatgaataaatgtaaaac |
203 |
Q |
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| T |
2536492 |
ataaattttgtgattcaaagctacgttaacataaaacatgaataaatgtaaaac |
2536439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 2536438 - 2536385
Alignment:
| Q |
228 |
tctcactttctcatttggaacttgtatctgaatttgatcagatcccatgatagc |
281 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||| | |||||| |
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| T |
2536438 |
tctcaccttctcatttggaacttgtatttgaatttgatcagatccaacgatagc |
2536385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 120 - 289
Target Start/End: Original strand, 1769613 - 1769782
Alignment:
| Q |
120 |
cccacccttcccaatgattaatcgtacctgtataaattttgtgattcaaagctatgtta-cataaaacatgaataaatgtaaaacataaatagacggata |
218 |
Q |
| |
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|||||| |||||||||||||| | ||||| |||||| |||||||| || |||| |||| |||||||| ||||||| | ||||||||||||||| |||| |
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| T |
1769613 |
cccacctttcccaatgattaacccgacctgcataaatgttgtgatttaaggctacgttaacataaaacgtgaataacgg-aaaacataaatagacagata |
1769711 |
T |
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| Q |
219 |
ttatcagtttctcactttctcatttggaacttgtatctgaatttgatcagatcccatgatagcctgagcag |
289 |
Q |
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| T |
1769712 |
ttatcagtttatcaccttctcatttggaacttgtatctgaatttgatcagatcccacgatagcctgagcag |
1769782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 46217647 - 46217736
Alignment:
| Q |
319 |
ttgcaagttaattgaagatgtcactgaaaattgaaa------aagaaagaagattatgcagaacctgattctcgttgtggttagattctg |
402 |
Q |
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| T |
46217647 |
ttgcaagttaactgaagatgccactgaaaattgaaagaaaaaaaaaaaaaagattatgcagaacgcgattctcgttgtggttagattctg |
46217736 |
T |
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