View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4634_high_5 (Length: 256)

Name: NF4634_high_5
Description: NF4634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4634_high_5
NF4634_high_5
[»] chr3 (3 HSPs)
chr3 (72-237)||(27611959-27612137)
chr3 (72-237)||(34500482-34500660)
chr3 (161-237)||(31501799-31501875)
[»] chr6 (2 HSPs)
chr6 (1-72)||(34763368-34763439)
chr6 (1-70)||(34770333-34770402)
[»] chr1 (2 HSPs)
chr1 (1-72)||(29457301-29457372)
chr1 (1-70)||(29461713-29461782)
[»] chr8 (2 HSPs)
chr8 (122-157)||(8937691-8937726)
chr8 (126-154)||(31848483-31848511)
[»] chr2 (2 HSPs)
chr2 (116-152)||(44770419-44770455)
chr2 (123-155)||(6700452-6700484)
[»] chr7 (1 HSPs)
chr7 (123-155)||(7985162-7985194)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 72 - 237
Target Start/End: Original strand, 27611959 - 27612137
Alignment:
Q  72 tgggaaccacaatgagtttaacaaaataacgttggc-------------gccaaaaacacatcatgattctgccaaattcaccgtcaatccaaacatgct 158  Q
    ||||||||||||||||||||| ||||||||||||||             |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27611959 tgggaaccacaatgagtttaataaaataacgttggcaccgtgattttgtgccaaaaacacatcgtgattctgccaaattcaccgtcaatccaaacatgct 27612058  T
Q  159 caaaaagactaaaacaaacattaacttaccaatggctgcagttgtcattgaagaggccttcagtttgacgggtgagagt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27612059 caaaaagactaaaacaaacattaacttaccaatggctgcagttgtcattgaagaggccttcagtttgacaggtgagagt 27612137  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 72 - 237
Target Start/End: Original strand, 34500482 - 34500660
Alignment:
Q  72 tgggaaccacaatgagtttaacaaaataacgttggc-------------gccaaaaacacatcatgattctgccaaattcaccgtcaatccaaacatgct 158  Q
    ||||||||||||||||||||||||||||||||||||             |||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  34500482 tgggaaccacaatgagtttaacaaaataacgttggcaccgtgattttgtgccaaaaacacatcgtgattctgccaaattcaccgtcaatacaaacatgct 34500581  T
Q  159 caaaaagactaaaacaaacattaacttaccaatggctgcagttgtcattgaagaggccttcagtttgacgggtgagagt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34500582 caaaaagactaaaacaaacattaacttaccaatggctgcagttgtcattgaagaggccttcagtttgacaggtgagagt 34500660  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 31501875 - 31501799
Alignment:
Q  161 aaaagactaaaacaaacattaacttaccaatggctgcagttgtcattgaagaggccttcagtttgacgggtgagagt 237  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  31501875 aaaaaactaaaacaaacatgaacttaccaatggctgcagttgtcattgaagaggccttcattttgacaggtgagagt 31501799  T

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Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 34763368 - 34763439
Alignment:
Q  1 ataataatgtacatcaattctcattgatatgtgcttgatcattagaatcaaagtcaaacattctctaattct 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34763368 ataataatgtacatcaattctcattgatatgtgcttgatcattagaatcaaagtcaaacattctctaattct 34763439  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 34770333 - 34770402
Alignment:
Q  1 ataataatgtacatcaattctcattgatatgtgcttgatcattagaatcaaagtcaaacattctctaatt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34770333 ataataatgtacatcaattctcattgatatgtgcttgatcattagaatcaaagtcaaacattctctaatt 34770402  T

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Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 29457301 - 29457372
Alignment:
Q  1 ataataatgtacatcaattctcattgatatgtgcttgatcattagaatcaaagtcaaacattctctaattct 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29457301 ataataatgtacatcaattctcattgatatgtgcttgatcattagaatcaaagtcaaacattctctaattct 29457372  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 29461713 - 29461782
Alignment:
Q  1 ataataatgtacatcaattctcattgatatgtgcttgatcattagaatcaaagtcaaacattctctaatt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29461713 ataataatgtacatcaattctcattgatatgtgcttgatcattagaatcaaagtcaaacattctctaatt 29461782  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 8937691 - 8937726
Alignment:
Q  122 atgattctgccaaattcaccgtcaatccaaacatgc 157  Q
    ||||||||||||||||||||||||||||||||||||    
T  8937691 atgattctgccaaattcaccgtcaatccaaacatgc 8937726  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 31848511 - 31848483
Alignment:
Q  126 ttctgccaaattcaccgtcaatccaaaca 154  Q
    |||||||||||||||||||||||||||||    
T  31848511 ttctgccaaattcaccgtcaatccaaaca 31848483  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 44770455 - 44770419
Alignment:
Q  116 cacatcatgattctgccaaattcaccgtcaatccaaa 152  Q
    |||||| ||||||||||||||||||||||||||||||    
T  44770455 cacatcttgattctgccaaattcaccgtcaatccaaa 44770419  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 6700484 - 6700452
Alignment:
Q  123 tgattctgccaaattcaccgtcaatccaaacat 155  Q
    |||||||||||||||||||||||| ||||||||    
T  6700484 tgattctgccaaattcaccgtcaaaccaaacat 6700452  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 7985162 - 7985194
Alignment:
Q  123 tgattctgccaaattcaccgtcaatccaaacat 155  Q
    ||||||||||||| |||||||||||||||||||    
T  7985162 tgattctgccaaactcaccgtcaatccaaacat 7985194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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