View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4634_low_1 (Length: 428)
Name: NF4634_low_1
Description: NF4634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4634_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 414
Target Start/End: Original strand, 41989922 - 41990317
Alignment:
| Q |
15 |
tttagaacatcacatacaacattaaaatgacagaagtgcaatctatacactctttcgctctcttttttaaatacttatgactatgttattgctcattagt |
114 |
Q |
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| T |
41989922 |
tttagaacatcacatacaacattaaaatgacagaattgcaaactatacactctttcactctcttttttaaatacttatgactatgttattgctcattagt |
41990021 |
T |
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| Q |
115 |
tgaaatttatactgttgtcacaatttaaaaaatggatagtgtataaatcaatggaactaaaatagaatttagctagctactactaactaatagaatgaat |
214 |
Q |
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| T |
41990022 |
tgaaatttatactgttgtcacaatttaaaaaatggatagtgtataaatcaatggaactaaaatagaatt----tagctactactaactaatagaatgaat |
41990117 |
T |
|
| Q |
215 |
agtttatatggttgattataccgcaggcaatggtgttgtgaatcacgaaaacttcacgtgcaattctgacttacttgtttactacaaccgaccaannnnn |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41990118 |
agtttatatggttgattataccgcaggcaatggtgttgtgaatcacgaaaacttcacgtgcaattctgacttacttgtttactacaaccgaccaattttt |
41990217 |
T |
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| Q |
315 |
nnatgaatttcaaaatatactaccaaacgttggaccactttgaatatagagcatttcagacattaatgttactgttaccagctctgtctctaatgttttt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41990218 |
ttatgaatttcaaaatatactaccaaacgttggaccactttgaatatagagcatttcagacattaatgttattgttaccagctctgtctctaatgttttt |
41990317 |
T |
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