View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4634_low_10 (Length: 229)
Name: NF4634_low_10
Description: NF4634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4634_low_10 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 57 - 229
Target Start/End: Complemental strand, 2664589 - 2664419
Alignment:
| Q |
57 |
gaaaggatgtatcgatatgtattaaataacgtacaagtataagattaacacagaataaaaaacaataatttatattcaatgttgtatctgcatatttatt |
156 |
Q |
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| T |
2664589 |
gaaaggatgtatcgatatgtattaaataacgtacaagtataagatta-cacagaataaaaa-caataatttatattcaatgttgtatctgcatatttatt |
2664492 |
T |
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| Q |
157 |
tacattatttttaaaacaatgaatgagattagaacatgaatatcaaataaatcatgctttactttccaaacaa |
229 |
Q |
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| T |
2664491 |
tacattatttttaaaacaatgaatgagattagaacatgaatatcaaataaatcatgctctacttttcaaacaa |
2664419 |
T |
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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 822745 - 822655
Alignment:
| Q |
138 |
ttgtatctgcatatttatttacattatttttaaaacaatgaatgagattagaacatgaatatcaaataaatcatgctttactttccaaacaa |
229 |
Q |
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| T |
822745 |
ttgtatctgcatatttatttacatttattttaaa-caatgaatgagattagaacatgaatatcaaataaatcatactttgcttttcaaacaa |
822655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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