View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4634_low_12 (Length: 213)

Name: NF4634_low_12
Description: NF4634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4634_low_12
NF4634_low_12
[»] chr1 (9 HSPs)
chr1 (18-154)||(8016214-8016350)
chr1 (35-92)||(46252676-46252733)
chr1 (57-94)||(1565551-1565588)
chr1 (35-72)||(3223706-3223743)
chr1 (37-90)||(5886990-5887043)
chr1 (145-174)||(8016160-8016189)
chr1 (35-92)||(10809364-10809421)
chr1 (46-103)||(38503470-38503527)
chr1 (38-74)||(29635384-29635420)
[»] chr6 (3 HSPs)
chr6 (35-92)||(3528822-3528879)
chr6 (35-84)||(281842-281891)
chr6 (31-72)||(6536986-6537027)
[»] chr7 (1 HSPs)
chr7 (35-91)||(25670580-25670636)
[»] chr5 (1 HSPs)
chr5 (38-92)||(11707074-11707128)
[»] chr2 (4 HSPs)
chr2 (46-92)||(35379021-35379067)
chr2 (38-92)||(44443340-44443394)
chr2 (35-92)||(43199778-43199835)
chr2 (32-92)||(43910990-43911050)
[»] chr8 (1 HSPs)
chr8 (35-92)||(7714261-7714318)
[»] chr3 (1 HSPs)
chr3 (40-92)||(41633379-41633431)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 8016350 - 8016214
Alignment:
Q  18 atgagactggccaggagaacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatagataacagaaactcatatgaaaacaa 117  Q
    ||||||||| || ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8016350 atgagactgtccgggagaacttatgacatgttcataacttgttttcagcttattttcctaagctctccaagatagataacagaaactcatatgaaaacaa 8016251  T
Q  118 taactccattttattttttgttatagaaaaatggctt 154  Q
    |||||||||||||||||||||||||||||||||||||    
T  8016250 taactccattttattttttgttatagaaaaatggctt 8016214  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 46252676 - 46252733
Alignment:
Q  35 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 92  Q
    ||||||||| ||||| |||| |||||||||| |||||||| | |||||||||||||||    
T  46252676 aacttatgacatgttcataagttgttttcaggttattttcataagctctccaagatag 46252733  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 1565551 - 1565588
Alignment:
Q  57 tgttttcagcttattttcctgagctctccaagatagat 94  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  1565551 tgttttcagcttattttcatgagctctccaaaatagat 1565588  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 3223743 - 3223706
Alignment:
Q  35 aacttatgaaatgtttataacttgttttcagcttattt 72  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  3223743 aacttatgacatgtttataagttgttttcagcttattt 3223706  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 5886990 - 5887043
Alignment:
Q  37 cttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagat 90  Q
    ||||||| ||||| |||| ||||||||||||||||||| | || ||||||||||    
T  5886990 cttatgacatgttcataagttgttttcagcttattttcgtaagttctccaagat 5887043  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 174
Target Start/End: Complemental strand, 8016189 - 8016160
Alignment:
Q  145 aaaatggctttgcatgttaaagctttgatg 174  Q
    ||||||||||||||||||||||||||||||    
T  8016189 aaaatggctttgcatgttaaagctttgatg 8016160  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 10809421 - 10809364
Alignment:
Q  35 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 92  Q
    ||||||||| ||||||||||  |||||||||||||||||| | || ||||||| ||||    
T  10809421 aacttatgacatgtttataatatgttttcagcttattttcataagttctccaatatag 10809364  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 38503470 - 38503527
Alignment:
Q  46 tgtttataacttgttttcagcttattttcctgagctctccaagatagataacagaaac 103  Q
    |||| |||| ||||||||||||||||||| | || |||||||||||| ||||| ||||    
T  38503470 tgttcataagttgttttcagcttattttcataagttctccaagatagctaacaaaaac 38503527  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 29635420 - 29635384
Alignment:
Q  38 ttatgaaatgtttataacttgttttcagcttattttc 74  Q
    |||||| |||||||||| |||||||||||||||||||    
T  29635420 ttatgacatgtttataagttgttttcagcttattttc 29635384  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 3528879 - 3528822
Alignment:
Q  35 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 92  Q
    ||||||||| ||||  |||||||||||||| ||||||||| | |||||||||||||||    
T  3528879 aacttatgacatgtccataacttgttttcatcttattttcataagctctccaagatag 3528822  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 281842 - 281891
Alignment:
Q  35 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctc 84  Q
    ||||||||| |||| ||||| ||||||||||||||||| | |||||||||    
T  281842 aacttatgacatgtctataagttgttttcagcttatttccatgagctctc 281891  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 6537027 - 6536986
Alignment:
Q  31 ggagaacttatgaaatgtttataacttgttttcagcttattt 72  Q
    ||||||||||||| ||||| |||| |||||||||||||||||    
T  6537027 ggagaacttatgacatgttcataagttgttttcagcttattt 6536986  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 25670580 - 25670636
Alignment:
Q  35 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagata 91  Q
    ||||||||| ||||| |||| |||||||||||||||||||   ||||||||||||||    
T  25670580 aacttatgacatgttaataaattgttttcagcttattttcacaagctctccaagata 25670636  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 11707128 - 11707074
Alignment:
Q  38 ttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 92  Q
    |||||| |||||||||| |||||||||||||||||||   |||||| ||||||||    
T  11707128 ttatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatag 11707074  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 35379021 - 35379067
Alignment:
Q  46 tgtttataacttgttttcagcttattttcctgagctctccaagatag 92  Q
    |||| |||| ||||||||||||||||||| | |||||||||||||||    
T  35379021 tgttcataagttgttttcagcttattttcataagctctccaagatag 35379067  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 44443394 - 44443340
Alignment:
Q  38 ttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 92  Q
    |||||||||||| |||| ||||||||||||||||||| |  |||||| |||||||    
T  44443394 ttatgaaatgttcataagttgttttcagcttattttcatatgctctcaaagatag 44443340  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 43199778 - 43199835
Alignment:
Q  35 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 92  Q
    ||||| ||| |||||||||| |||||||||||||| |||| | ||| |||||||||||    
T  43199778 aacttgtgacatgtttataagttgttttcagcttaatttcataagccctccaagatag 43199835  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 43910990 - 43911050
Alignment:
Q  32 gagaacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 92  Q
    |||||||||||| ||||| |||| |||||||||||||||| ||   |||| ||||||||||    
T  43910990 gagaacttatgacatgttcataagttgttttcagcttattatcacaagctttccaagatag 43911050  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 7714318 - 7714261
Alignment:
Q  35 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 92  Q
    ||||||||||||||  || |  |||||||| ||||||||| |||||||||||||||||    
T  7714318 aacttatgaaatgtcgatgagctgttttcaacttattttcatgagctctccaagatag 7714261  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 41633431 - 41633379
Alignment:
Q  40 atgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 92  Q
    |||| |||| ||||| ||||||||||||||||||| | |||||||||| ||||    
T  41633431 atgacatgtctataaattgttttcagcttattttcataagctctccaaaatag 41633379  T

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