View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4634_low_6 (Length: 261)
Name: NF4634_low_6
Description: NF4634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4634_low_6 |
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| [»] chr1 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 29461480 - 29461733
Alignment:
| Q |
8 |
agattattcttttgggttgtttgtgcagcggatgacatgactaagaggatcgagagctttcaagcttaaagctctgatgccaagaaagaatgttttggga |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461480 |
agatcattcttttgggttgtttgtgcagcggatgacatgactaagaggatcgagagctttcaagcttaaagctctgatgccaagaaagaatgttttggga |
29461579 |
T |
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| Q |
108 |
atgatgaaatgttattcattcattgtattgagtatatatacacaaatgtactctttacattatgcctagacataactgtgtaacagtataaaaggaaata |
207 |
Q |
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| T |
29461580 |
atgataaaatgttattcattcattgtattgagtatatatacacaaatgtactctttacattatgcctagacataactgtgtaacagtataaaaggaaata |
29461679 |
T |
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| Q |
208 |
gaataaaaggctattgactaggtacaataatatataataatgtacatcaattct |
261 |
Q |
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| T |
29461680 |
gaataaaaggctattgactaggtacaataatatataataatgtacatcaattct |
29461733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 89 - 261
Target Start/End: Original strand, 29457149 - 29457321
Alignment:
| Q |
89 |
aagaaagaatgttttgggaatgatgaaatgttattcattcattgtattgagtatatatacacaaatgtactctttacattatgcctagacataactgtgt |
188 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
29457149 |
aagaaagaatgttttgggaatgataaaatgttattcattcattgtattgagtatatatacataaatgtactctttacattatgcctagaaataactgtgt |
29457248 |
T |
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| Q |
189 |
aacagtataaaaggaaatagaataaaaggctattgactaggtacaataatatataataatgtacatcaattct |
261 |
Q |
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| T |
29457249 |
aacagtataaaaggaaatagaataaaaggctattgactaggtacaataatatataataatgtacatcaattct |
29457321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 34770101 - 34770353
Alignment:
| Q |
8 |
agattattcttttgggttgtttgtgcagcggatgacatgactaagaggatcgagagctttcaagcttaaagctctgatgccaagaaagaatgttttggga |
107 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34770101 |
agatcattcttttggattgtttgtgcagcggatgacatgactaagaggatcgagagctttcaagcttaaagctctgataccaagaaagaatgttttggga |
34770200 |
T |
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| Q |
108 |
atgatgaaatgttattcattcattgtattgagtatatatacacaaatgtactctttacattatgcctagacataactgtgtaacagtataaaaggaaata |
207 |
Q |
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| T |
34770201 |
atgat-aaatgttattcattcattgtattgagtatatatacacaaatgtactctttacattatgcctagacataactgtgtaacagtataaaaggaaata |
34770299 |
T |
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| Q |
208 |
gaataaaaggctattgactaggtacaataatatataataatgtacatcaattct |
261 |
Q |
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| T |
34770300 |
gaataaaaggctattgactaggtacaataatatataataatgtacatcaattct |
34770353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 89 - 261
Target Start/End: Original strand, 34763217 - 34763388
Alignment:
| Q |
89 |
aagaaagaatgttttgggaatgatgaaatgttattcattcattgtattgagtatatatacacaaatgtactctttacattatgcctagacataactgtgt |
188 |
Q |
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| T |
34763217 |
aagaaagaatgttttgggaatgac-aaatgttattcattcattgtattgagtatatatacacaaatgtactctttacattatgcctagacataactgtgt |
34763315 |
T |
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| Q |
189 |
aacagtataaaaggaaatagaataaaaggctattgactaggtacaataatatataataatgtacatcaattct |
261 |
Q |
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| T |
34763316 |
aacagtataaaaggaaatagaataaaaggctattgactaggtacaataatatataataatgtacatcaattct |
34763388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 25814608 - 25814521
Alignment:
| Q |
13 |
attcttttgggttgtttgtgcagcggatgacatgactaagaggatcgagagctttcaagcttaa-agctctgatgccaagaaagaatg |
99 |
Q |
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| T |
25814608 |
attcttttggtttgagtttgcagcgaatgacatggctaaatggatcaagagccttcaagcttaagagctctgatgccaagaaagaatg |
25814521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 2304760 - 2304722
Alignment:
| Q |
59 |
gagagctttcaagcttaaagctctgatgccaagaaagaa |
97 |
Q |
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| T |
2304760 |
gagagctttcaagcttaaagctctgataccaagatagaa |
2304722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 48235300 - 48235262
Alignment:
| Q |
59 |
gagagctttcaagcttaaagctctgatgccaagaaagaa |
97 |
Q |
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| T |
48235300 |
gagagctttcaagcttaaagctctgatgccaagatagaa |
48235262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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