View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4635-Insertion-12 (Length: 168)
Name: NF4635-Insertion-12
Description: NF4635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4635-Insertion-12 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 9e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 9e-84
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 3675752 - 3675912
Alignment:
| Q |
8 |
agccactctctatgaccttgcaagccatccaagtccgaacatttaacagctacagtttgagcctttaacccttgtctaagtttatcatcaacaaaaccct |
107 |
Q |
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| T |
3675752 |
agccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaacccttgtctaagtttatcatcaacaaaaccct |
3675851 |
T |
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| Q |
108 |
tataaacaggtccaaatccaccttcacctaacatattactccatgagaaattatgtgttgc |
168 |
Q |
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| T |
3675852 |
tataaacaggtccaaatccaccttcacctaacatattactccatgagaaattatgtgttgc |
3675912 |
T |
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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 48552956 - 48552852
Alignment:
| Q |
64 |
ttgagcctttaacccttgtctaagtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacctaacatattactccatgagaaattatgt |
163 |
Q |
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| T |
48552956 |
ttgagccttcaaaccatgtctgagtttatcatcaacaaaacccttatacacaggtccaaaaccaccttcaccaagcaaattactccttgaaaaattatgt |
48552857 |
T |
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| Q |
164 |
gttgc |
168 |
Q |
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| T |
48552856 |
gttgc |
48552852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 10845900 - 10845985
Alignment:
| Q |
50 |
ttaacagctacagtttgagcctttaacccttgtctaagtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacc |
135 |
Q |
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| T |
10845900 |
ttaacagcaacaggttgagccttcaaaccttgtctaaaattatcatcaaaataacccttatgaacagttccaaaaccaccttcacc |
10845985 |
T |
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