View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4635-Insertion-2 (Length: 1054)
Name: NF4635-Insertion-2
Description: NF4635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4635-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 437 - 1053
Target Start/End: Original strand, 44001070 - 44001684
Alignment:
| Q |
437 |
gttcctaagcaagtatttatcatgaatcaatatagactggaaataaatcataaaattgctggggcaatgatacagtcatatataaatcaaacttcattaa |
536 |
Q |
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| T |
44001070 |
gttcctaagcaagtatttatcatgaatcaatatagactggaaataaatcatcaaattgctggggcaatgatacagtcatatataaatcaaacttcattaa |
44001169 |
T |
|
| Q |
537 |
gaatatttatgtgattacattatatatagctatttaaatactagaaagcacttgaaacataaaacactacataaactaacaatactaaagtcactactag |
636 |
Q |
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| T |
44001170 |
gaatatttatgtgattacattata----gctatttaaatactagaaagcacttgaaacataaaacactacataaactaacaatactaaagtcactactag |
44001265 |
T |
|
| Q |
637 |
taatgtactaaatcacaaagccagtttattcttccagcaacaagg----tatcatgattcaattagaacgagattggtatggcttgatcaattgagtgag |
732 |
Q |
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| T |
44001266 |
taatgtactaaatcacaaagccagtttattcttccagcaacaaggaaggtatcatgattcaattagaacgagattggtatggcttgatcaattgagtgag |
44001365 |
T |
|
| Q |
733 |
tgagccacttaggtgaagggacataatttcattggtggaccccatcagttgccctccaatgaacacagcaggaacaggtgcagtacaacctaacctcaac |
832 |
Q |
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| T |
44001366 |
tgagccacttaggtgaagggacataatttcattggtggaccccatcagttgccctccaatgaacacagcaggaacaggtgcagtacaacctaacctcaac |
44001465 |
T |
|
| Q |
833 |
aaagctttctccatttcccttccttcagggtcttgatcaatttcatgaaccataggcctaatcccaagttcttgaaacagaatgttaactgcatagcata |
932 |
Q |
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| T |
44001466 |
aaagctttctccatttcccttccttcagggtcttgatcaatttcatgaaccataggcctaatcccaagttcttgaaacagaatgttaactgcatagcata |
44001565 |
T |
|
| Q |
933 |
gacaacatgaactctttgtgaaaatcaccacacctttttcagatgccaacctcatcactttgtccatcttgatgatgatgatactgttaaaagttctagt |
1032 |
Q |
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| T |
44001566 |
gacaacatgaactctttgtgaaaatcaccacacctttttcagatgccaacctcatcactttgtccatct---tgatgatgatactgttaaaagttctagt |
44001662 |
T |
|
| Q |
1033 |
tcttgtagttg-tcttctagaa |
1053 |
Q |
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||||||||||| |||||||||| |
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| T |
44001663 |
tcttgtagttgttcttctagaa |
44001684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 276
Target Start/End: Original strand, 44000641 - 44000909
Alignment:
| Q |
8 |
atactagtgtgcggtattttcataagcaaatattagttgttaatttgttaggggatattaatttgcgaccataatcacatcatgttccttgataaggcag |
107 |
Q |
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| T |
44000641 |
atactagtgtgcggtattttcataagcaaatgttagttgttaatttgttaggggatacgaatttgcgaccataatcacatcatgttccttgataaggcag |
44000740 |
T |
|
| Q |
108 |
agaatcacagtcaaacgagactaatacagtcataatcatcgtaatattgcagtcatagaaatatcaaaaaccttgattttacaaatcagattgcggtgct |
207 |
Q |
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| T |
44000741 |
agaatcacattcaaacgagactaatacactcataatcatcgtaatattgcagtcatagaaatatcaaaaaccttgattttacaaatcagattgcggtgcg |
44000840 |
T |
|
| Q |
208 |
gaacatatttttagaacccttattagctagcagtatgaaaacagctatacaaatcatgagatagtcttg |
276 |
Q |
| |
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| T |
44000841 |
gaacatatttttagaacccttattagctagcagtatgaaaacagctatacgaatcatgagatagtcttg |
44000909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 6e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 731 - 1002
Target Start/End: Complemental strand, 39861749 - 39861478
Alignment:
| Q |
731 |
agtgagccacttaggtgaagggacataatttcattggtggaccccatcagttgccctccaatgaacacagcaggaacaggtgcagtacaacctaacctca |
830 |
Q |
| |
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||||| ||||||||||| |||||||| | ||||||||||||||||| || ||||||||||| || ||||| ||||||||| ||||||| ||| | |
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| T |
39861749 |
agtgaaccacttaggtgtagggacattacttcattggtggaccccacaagccttcctccaatgaatactgcagggacaggtgcattacaacccaactttg |
39861650 |
T |
|
| Q |
831 |
acaaagctttctccatttcccttccttcagggtcttgatcaatttcatgaaccataggcctaatcccaagttcttgaaacagaatgttaactgcatagca |
930 |
Q |
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| ||||||||||||||| |||||||||| |||| |||||||||||||||| ||| | |||| ||||||||||| |||||| ||||||||||| |
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| T |
39861649 |
ttatagctttctccatttcttttccttcaggatctttgtcaatttcatgaaccacagggaacactccaatttcttgaaacaaaatgttcactgcatagca |
39861550 |
T |
|
| Q |
931 |
tagacaacatgaactctttgtgaaaatcaccacacctttttcagatgccaacctcatcactttgtccatctt |
1002 |
Q |
| |
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| |||||| || ||||| ||||||||||| ||||| ||||| | |||||||||||||| || |||||||| |
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| T |
39861549 |
caaacaacaagagctcttggtgaaaatcacaacacccttttctgtagccaacctcatcaccttctccatctt |
39861478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 730 - 999
Target Start/End: Complemental strand, 39866204 - 39865935
Alignment:
| Q |
730 |
gagtgagccacttaggtgaagggacataatttcattggtggaccccatcagttgccctccaatgaacacagcaggaacaggtgcagtacaacctaacctc |
829 |
Q |
| |
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|||||| ||||||||||| |||||||| | ||||||||||||||||| || ||||||||||| || ||||| ||||||||| ||||||| ||| | |
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| T |
39866204 |
gagtgaaccacttaggtgtagggacattacttcattggtggaccccacaagccttcctccaatgaatactgcagggacaggtgcattacaacccaacttt |
39866105 |
T |
|
| Q |
830 |
aacaaagctttctccatttcccttccttcagggtcttgatcaatttcatgaaccataggcctaatcccaagttcttgaaacagaatgttaactgcatagc |
929 |
Q |
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| ||||||||||||||| | |||||||| |||| ||||||||||||| || ||| | |||| ||||||||||| |||||| |||||||||| |
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| T |
39866104 |
gttatagctttctccatttctttcccttcaggatctttgtcaatttcatgaatcacagggtacactccaatttcttgaaacaaaatgttcactgcatagc |
39866005 |
T |
|
| Q |
930 |
atagacaacatgaactctttgtgaaaatcaccacacctttttcagatgccaacctcatcactttgtccat |
999 |
Q |
| |
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|||||||||| || ||||| ||||| | ||||||||| ||||| | |||||||||||||| || ||||| |
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| T |
39866004 |
atagacaacaagagctcttggtgaataccaccacacccttttctgtagccaacctcatcaccttctccat |
39865935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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