View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4635-Insertion-4 (Length: 960)

Name: NF4635-Insertion-4
Description: NF4635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4635-Insertion-4
NF4635-Insertion-4
[»] chr1 (21 HSPs)
chr1 (289-840)||(25483104-25483646)
chr1 (289-821)||(25860406-25860931)
chr1 (500-850)||(25884213-25884567)
chr1 (509-840)||(25603395-25603726)
chr1 (8-427)||(25603787-25604217)
chr1 (785-956)||(25483714-25483886)
chr1 (8-259)||(25886063-25886322)
chr1 (820-956)||(25860114-25860251)
chr1 (287-427)||(25885862-25886005)
chr1 (500-612)||(25886397-25886509)
chr1 (70-128)||(25603279-25603337)
chr1 (70-133)||(25884109-25884169)
chr1 (797-840)||(25604229-25604272)
chr1 (797-840)||(25886326-25886369)
chr1 (308-375)||(50668288-50668355)
chr1 (575-612)||(25604300-25604337)
chr1 (312-375)||(50667168-50667231)
chr1 (313-356)||(50667483-50667526)
chr1 (704-737)||(27452929-27452962)
chr1 (704-737)||(50667804-50667837)
chr1 (307-356)||(50669592-50669641)
[»] chr8 (1 HSPs)
chr8 (314-375)||(5555321-5555382)


Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 289 - 840
Target Start/End: Original strand, 25483104 - 25483646
Alignment:
Q  289 agctttcaacttttaatcctgttcattgtttagatcaaataagaaagcaaagggtgagaatattttaatagtgttgaaagttaaaaagaaagagacaggg 388  Q
    ||||||||| ||||||||||||||||  || ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||     
T  25483104 agctttcaaattttaatcctgttcatcattcagatcaaataagaaaacaaagggtgaggatattttaatactgttgaaagttaaaaagaaagagacagga 25483203  T
Q  389 cacaaacttaccttcatttgggaacggcttgggaaatggtttggtagccgttaaagtatgattgtcggcaatggttttgtagtcggcaatgttggtcttc 488  Q
    ||||||||||||||||||||||      |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25483204 cacaaacttaccttcatttggg------ttgggaaatggttttgtagtcgttaaagtatgattgtcggcaatggttttgtagtcggcaatgttggtcttc 25483297  T
Q  489 acagcaggaggacgaagaatttcagataaatactttctgtcctcttctttcttcttagcaagataccgttcgcagttttccttgagaaatggagaccagt 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25483298 acagcaggaggacgaagaatttcagataaatactttctgtcctcttctttcttcttagcaagataccgttcgcagttttccttcagaaatggagaccagt 25483397  T
Q  589 tggtatattccatcttagcaactttggtcgtcacaggaggaggaggcttctcctcagaaataaacttagtttcctcagcttcttgcttcttagcaggaaa 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25483398 tggtatattccatcttagcaactttggtcgtcacaggaggaggaggcttctcctcagaaataaacttagtttcctcagcttcttgcttcttagcaggaaa 25483497  T
Q  689 taggtcgttgttttccatcttagcaacttctgtttattcatcaaaggcagcaagataattaattatatgaaaacacagtgtcaaattcaaatcaatggtt 788  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||| ||||    
T  25483498 taggtcgttgttttccatcttagcaacttttg-ttattcatcaaaggcagcaagataattaattatatgaaa--acagtgtgaaattcaaatcaaaggtt 25483594  T
Q  789 ttaaaccctaataagcacggattcacataacatattgatcaagggcgagaga 840  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25483595 ttaaaccctaataagcatggattcacataacatattgatcaagggcgagaga 25483646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 289 - 821
Target Start/End: Complemental strand, 25860931 - 25860406
Alignment:
Q  289 agctttcaacttttaatcctgttcattgtttagatcaaataagaaagcaaagggtgagaatattttaatagtgttgaaagttaaaaagaaagagacaggg 388  Q
    ||||||||||||||||||||||||||  || ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||     
T  25860931 agctttcaacttttaatcctgttcatcattcagatcaaataagaaaacaaagggtgaggatattttaatactgttgaaagttaaaaagaaagagacagga 25860832  T
Q  389 cacaaacttaccttcatttgggaacggcttgggaaatggtttggtagccgttaaagtatgattgtcggcaatggttttgtagtcggcaatgttggtcttc 488  Q
    ||||||||||||||||||||||      |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25860831 cacaaacttaccttcatttggg------ttgggaaatggttttgtagtcgttaaagtatgattgtcggcaatggttttgtagtcggcaatgttggtcttc 25860738  T
Q  489 acagcaggaggacgaagaatttcagataaatactttctgtcctcttctttcttcttagcaagataccgttcgcagttttccttgagaaatggagaccagt 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25860737 acagcaggaggacgaagaatttcagataaatactttctgtcctcttctttcttcttagcaagataccgttcgcagttttccttcagaaatggagaccagt 25860638  T
Q  589 tggtatattccatcttagcaactttggtcgtcacaggaggaggaggcttctcctcagaaataaacttagtttcctcagcttcttgcttcttagcaggaaa 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25860637 tggtatattccatcttagcaactttggtcgtcacaggaggaggaggcttctcctcagaaataaacttagtttcctcagcttcttgcttcttagcaggaaa 25860538  T
Q  689 taggtcgttgttttccatcttagcaacttctgtttattcatcaaaggcagcaagataattaattatatgaaaacacagtgtcaaattcaaatcaatggtt 788  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||    
T  25860537 taggtagttgttttccatcttagcaacttctgtttattcatcaaaggcagcaagataattaattatacgaaaa-acagtgtgaaattcaaatcaaaggtt 25860439  T
Q  789 ttaaaccctaataagcacggattcacataacat 821  Q
    |||||||||||||||||||||||||||||||||    
T  25860438 ttaaaccctaataagcacggattcacataacat 25860406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 500 - 850
Target Start/End: Complemental strand, 25884567 - 25884213
Alignment:
Q  500 acgaagaatttcagataaatactttctgtcctcttctttcttcttagcaagataccgttcgcagttttccttgagaaatggagaccagttggtatattcc 599  Q
    |||||||| |||||| |||||||| | |||||||||||||| |||||||||||||  ||||||||||||||| || ||||||||||||| ||||||||||    
T  25884567 acgaagaaattcagaaaaatacttacggtcctcttctttctgcttagcaagatacttttcgcagttttccttcagcaatggagaccagtcggtatattcc 25884468  T
Q  600 atcttagcaactttggtcgtcacaggaggaggaggcttctcctcagaaataaacttagtttcctcagcttcttgcttcttagcaggaaataggtcgttgt 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25884467 atcttagcaactttggtcgtcacaggaggaggaggcttctcctcagaaataaacttagtttcctcagcttcttgcttcttagcaggaaataggtcgttgt 25884368  T
Q  700 tttccatcttagcaacttctgtttattcatcaaaggcagcaagataattaattatatgaaaacacagtgtcaaattcaaatcaatggttttaaaccctaa 799  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25884367 tttccatcttagcaacttctgtttattcatcaaaggcagcaagataattaattatatgaaaacacagtgtcaaattcaaatcaatggttttaaaccctaa 25884268  T
Q  800 taagcacggattcacataacatattgatcaagggc----gagagaattatgaatc 850  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  25884267 taagcacggattcacataacatattgatcaagggcaagagagagaattatgaatc 25884213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 509 - 840
Target Start/End: Complemental strand, 25603726 - 25603395
Alignment:
Q  509 ttcagataaatactttctgtcctcttctttcttcttagcaagataccgttcgcagttttccttgagaaatggagaccagttggtatattccatcttagca 608  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||||    
T  25603726 ttcagaaaaatacttacggtcctcttctttcttcttagcaagataccgttcgcagtgttccttcagcaatggagaccagtcggtatattccatcttagca 25603627  T
Q  609 actttggtcgtcacaggaggaggaggcttctcctcagaaataaacttagtttcctcagcttcttgcttcttagcaggaaataggtcgttgttttccatct 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25603626 actttggtcgtcacaggaggaggaggcttctcctcagaaataaacttagtttcctcagcttcttgcttcttagcaggaaataggttgttgttttccatct 25603527  T
Q  709 tagcaacttctgtttattcatcaaaggcagcaagataattaattatatgaaaacacagtgtcaaattcaaatcaatggttttaaaccctaataagcacgg 808  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  25603526 tagcaacttctgtttattcatcaaaggcagcaagataattaattatatgaaaacacagtgtcaaattcaaatcaaaggttttaaaccctaataagcatgg 25603427  T
Q  809 attcacataacatattgatcaagggcgagaga 840  Q
    ||||||||||||||||||||||||||||||||    
T  25603426 attcacataacatattgatcaagggcgagaga 25603395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 8 - 427
Target Start/End: Complemental strand, 25604217 - 25603787
Alignment:
Q  8 agaactatgaatcaatgtgaaaacacactcaattttacaaaacctcacagtctnnnnnnngccccaattaaaggttttaagccctaatcccccaatgcga 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||||    
T  25604217 agaactatgaatcaatatgaaaacacactcaattttacaaaacctcacagtctaaaaaaagccccaattaaaggttttaaaccctaatcccccaatgcga 25604118  T
Q  108 gaagatttgaatatttcaaagtgtcaaagcagg---------gttaaatatggttgaaagttaaaaacagaaatagaccgagtcacaaacttacttccat 198  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||    
T  25604117 gaagatttgaatatttcaaagtgtcaaagcagggttaggatagttaaatatggttgaaagttaaaaa-agaaatagaccgagtcacaaacttacttttat 25604019  T
Q  199 ctagctgctttgcatcaagaagcaagttgagattgagagataggctagaaggctgacaacaacctagnnnnnnnnnnnnnnnnncattatagctttcaac 298  Q
    |||||||||||  ||||| ||   |||||| ||||||||| |   ||||||||||| |||||| |||                 |||| |||||||||||    
T  25604018 ctagctgctttagatcaaaaattgagttgaaattgagagacatcttagaaggctgataacaacatagttttcttttcattttttcattgtagctttcaac 25603919  T
Q  299 ttttaatcctgttcattgtttagatcaaataagaaagcaaagggtgagaatattttaatagtgttgaaa---gttaaaaagaaagagacagggcacaaac 395  Q
    || |||||||||||||  || ||||||||||||||| ||||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  25603918 ttctaatcctgttcatcattcagatcaaataagaaaacaaagggtgaggatattttaatagtgttgaaagttgttaaaaagaaagagacagggcacaaac 25603819  T
Q  396 ttaccttcatttgggaacggcttgggaaatgg 427  Q
    ||||||||||||||||||||||||||||||||    
T  25603818 ttaccttcatttgggaacggcttgggaaatgg 25603787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 785 - 956
Target Start/End: Original strand, 25483714 - 25483886
Alignment:
Q  785 ggttttaaaccctaataagcacggattcacataacatattgatcaagggcgagagaattatgaatcaaccgaaattctaacagagaccacaaccgagaat 884  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25483714 ggttttaaaccctaataagcacggattcacataacatattgatcaagggcgagagaattatgaatcaaccgaaattctaacagagaccacaaccgagaat 25483813  T
Q  885 tatgaaagaacaaaaatagtaaaataaaaccaacaaattatcgattt-atgatgttaataataatactcaatg 956  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25483814 tatgaaagaacaaaaatagtaaaataaaaccaacaaattatcgatttaatgatgttaataataatactcaatg 25483886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 25886322 - 25886063
Alignment:
Q  8 agaactatgaatcaatgtgaaaacacactcaattttacaaaacctcacagtctnnnnnnngccccaattaaaggttttaagccctaatcccccaatgcga 107  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||||    
T  25886322 agaattatgaatcaatatgaaaacacactcaattttacaaaacctcacagtctaaaaaaagccccaattaaaggttttaaaccctaatcccccaatgcga 25886223  T
Q  108 gaagatttgaatatttcaaagtgtcaaagcagg---------gttaaatatggttgaaagttaaaaacagaaatagaccgagtcacaaacttacttccat 198  Q
    ||||||||||| |||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |     
T  25886222 gaagatttgaacatttcaaagtgtcaaagcagggttaggatagttaaatatggttgaaagttaaaaa-agaaatagaccgagtcacaaacttacttttac 25886124  T
Q  199 ctagctgctttgcatcaagaagcaagttgagattgagagataggctagaaggctgacaaca 259  Q
    ||||||||||||||||||| ||  |||||| ||||||||| |   |||||| |||||||||    
T  25886123 ctagctgctttgcatcaaggagtgagttgaaattgagagacatcttagaagactgacaaca 25886063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 820 - 956
Target Start/End: Complemental strand, 25860251 - 25860114
Alignment:
Q  820 atattgatcaagggcgagagaattatgaatcaaccgaaattctaacagagaccacaaccgagaattatgaaagaacaaaaatagtaaaataaaaccaaca 919  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25860251 atattgatcaagggtgagagaactatgaatcaaccgaaattctaacagagaccacaaccgagatttatgaaagaacaaaaatagtaaaataaaaccaaca 25860152  T
Q  920 aattatcgattt-atgatgttaataataatactcaatg 956  Q
    |||||||||||| |||||||||||||||||||||||||    
T  25860151 aattatcgatttaatgatgttaataataatactcaatg 25860114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 287 - 427
Target Start/End: Complemental strand, 25886005 - 25885862
Alignment:
Q  287 atagctttcaacttttaatcctgttcattgtttagatcaaataagaaagcaaagggtgagaatattttaatagtgttgaaa---gttaaaaagaaagaga 383  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||   ||||||||||||||||    
T  25886005 atagctatcaacttttaatcctgttcatcgtttagatcaaataagaaaacaaagggtgaggatattttaatagtgttgaaagttgttaaaaagaaagaga 25885906  T
Q  384 cagggcacaaacttaccttcatttgggaacggcttgggaaatgg 427  Q
    |||||||||||||||||||||||||| ||| |||||||||||||    
T  25885905 cagggcacaaacttaccttcatttggcaacagcttgggaaatgg 25885862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 500 - 612
Target Start/End: Complemental strand, 25886509 - 25886397
Alignment:
Q  500 acgaagaatttcagataaatactttctgtcctcttctttcttcttagcaagataccgttcgcagttttccttgagaaatggagaccagttggtatattcc 599  Q
    |||||||| |||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  25886509 acgaagaaattcagaaaaatacttacggtcctcttctttcttcttagcaagataccgttcgcagttttccttcagaaatggagaccagtcggtatattcc 25886410  T
Q  600 atcttagcaactt 612  Q
    |||||||||||||    
T  25886409 atcttagcaactt 25886397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 25603337 - 25603279
Alignment:
Q  70 cccaattaaaggttttaagccctaatcccccaatgcgagaagatttgaatatttcaaag 128  Q
    |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||    
T  25603337 cccaattaaaggttttaaaccctaatcccccaatccaagaagatttgaatatttcaaag 25603279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 25884169 - 25884109
Alignment:
Q  70 cccaattaaaggttttaagccctaatcccccaatgcgagaagatttgaatatttcaaagtgtca 133  Q
    |||||||||||||||||| ||||||||||||||| |   |||||||||||||||||||| ||||    
T  25884169 cccaattaaaggttttaaaccctaatcccccaatcc---aagatttgaatatttcaaagcgtca 25884109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 797 - 840
Target Start/End: Complemental strand, 25604272 - 25604229
Alignment:
Q  797 taataagcacggattcacataacatattgatcaagggcgagaga 840  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||    
T  25604272 taataagcacggattcacataacatattgatgaagggtgagaga 25604229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 797 - 840
Target Start/End: Complemental strand, 25886369 - 25886326
Alignment:
Q  797 taataagcacggattcacataacatattgatcaagggcgagaga 840  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||    
T  25886369 taataagcacggattcacataacatattgatgaagggtgagaga 25886326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 308 - 375
Target Start/End: Complemental strand, 50668355 - 50668288
Alignment:
Q  308 tgttcattgtttagatcaaataagaaagcaaagggtgagaatattttaatagtgttgaaagttaaaaa 375  Q
    |||||||||||| |||||||||||||| ||||||||||| || ||| ||||  |||||||| ||||||    
T  50668355 tgttcattgttttgatcaaataagaaaccaaagggtgaggatgtttcaatatggttgaaagataaaaa 50668288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 612
Target Start/End: Complemental strand, 25604337 - 25604300
Alignment:
Q  575 aaatggagaccagttggtatattccatcttagcaactt 612  Q
    |||||||||||||| |||||||||||||||||||||||    
T  25604337 aaatggagaccagtcggtatattccatcttagcaactt 25604300  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 50667231 - 50667168
Alignment:
Q  312 cattgtttagatcaaataagaaagcaaagggtgagaatattttaatagtgttgaaagttaaaaa 375  Q
    |||| ||| |||||||||||||| || ||||| ||||||||| ||||  |||||||||||||||    
T  50667231 cattattttgatcaaataagaaaccagagggttagaatatttcaatatggttgaaagttaaaaa 50667168  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 50667526 - 50667483
Alignment:
Q  313 attgtttagatcaaataagaaagcaaagggtgagaatattttaa 356  Q
    ||||||| |||||||||||||| ||||||||||| |||||||||    
T  50667526 attgttttgatcaaataagaaatcaaagggtgaggatattttaa 50667483  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 737
Target Start/End: Complemental strand, 27452962 - 27452929
Alignment:
Q  704 catcttagcaacttctgtttattcatcaaaggca 737  Q
    ||||||||||||||||||||||||||| ||||||    
T  27452962 catcttagcaacttctgtttattcatcgaaggca 27452929  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 737
Target Start/End: Complemental strand, 50667837 - 50667804
Alignment:
Q  704 catcttagcaacttctgtttattcatcaaaggca 737  Q
    ||||| ||||||||||||||||||||||||||||    
T  50667837 catctcagcaacttctgtttattcatcaaaggca 50667804  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 50669641 - 50669592
Alignment:
Q  307 ctgttcattgtttagatcaaataagaaagcaaagggtgagaatattttaa 356  Q
    ||||| ||||||| |||||||||||||| ||||||||||| ||| |||||    
T  50669641 ctgtttattgttttgatcaaataagaaaccaaagggtgagtatactttaa 50669592  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 5555382 - 5555321
Alignment:
Q  314 ttgtttagatcaaataagaaagcaaagggtgagaatattttaatagtgttgaaagttaaaaa 375  Q
    |||||| ||||||||||||||||||| ||||||  || |||||||  | |||||||||||||    
T  5555382 ttgttttgatcaaataagaaagcaaatggtgaggttactttaatatggctgaaagttaaaaa 5555321  T

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