View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4635-Insertion-6 (Length: 788)

Name: NF4635-Insertion-6
Description: NF4635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4635-Insertion-6
NF4635-Insertion-6
[»] chr3 (1 HSPs)
chr3 (46-788)||(52778859-52779600)


Alignment Details
Target: chr3 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 46 - 788
Target Start/End: Complemental strand, 52779600 - 52778859
Alignment:
Q  46 acattccatgttgattttcatattgtcaaactcatacaacaagagtagtattaagggaatttatatttgtggattgtggtgtgcgcatattgcttagtac 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52779600 acattccatgttgattttcatattgtcaaactcatacaacaagagtagtattaagggaatttatatttgtggattgtggtgtgcgcatattgcttagtac 52779501  T
Q  146 acatgcaaggattttatagtagggggaaggtaagactgcaagcgtgagggtggacacaagtggttgtattaaaatcnnnnnnnnttgttaaaagtttgaa 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  52779500 acatgcaaggattttatagtagggggaaggtaagactgcaagcgtgagggtggacacaagtggttgtattaaaatcaaaaaaatttgttaaaagtttgaa 52779401  T
Q  246 aataaatggagaaaacgttttgttatgactataagacaaaagtggtccatttgaatnnnnnnnnnngtgggaaaaatggtccattctggttgtctttgcg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||    
T  52779400 aataaatggagaaaacgttttgttatgactataagacaaaagtggtccatttgaataaaaaaaaa-gtgggaaaaatggtccattctggttgtctttgcg 52779302  T
Q  346 aactgtgagcgtataattccatttagtaattgtaattttattttgaaaatttgtcgttttttgccattctaatacatatgtgatatgtgttcatattagt 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52779301 aactgtgagcgtataattccatttagtaattgtaattttattttgaaaatttgtcgttttttgccattctaatacatatgtgatatgtgttcatattagt 52779202  T
Q  446 agatttttagtcaagcgttaagagatatgttcggatataatgtatgacaatgtctttgcatgtaattatttcatgtcgaaagaatctataaaagaaaatt 545  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52779201 agatttttagtcaagcgttaagagatatgttcggatataatgtctgacaatgtctttgcatgtaattatttcatgtcgaaagaatctataaaagaaaatt 52779102  T
Q  546 gtgttcgtaaaaaataaagactaaacctacatgttaattatgcaacttgaattttagtc-nnnnnnnttaggcaacttgagttttagggtttaattggga 644  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  52779101 gtgttcgtaaaaaataaagactaaacctacatgttaattatgcaacttgaattttagtcaaaaaaaattaggcaacttgagttttagggtttaattggga 52779002  T
Q  645 gtttagaggaaagtagaatagggagcactttgtaggagggggaggaaggaaacgaaaagagaactcctcaattcttttttagtgttttcgaaatgtaatg 744  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52779001 gtttagacgaaagtagaatagggagcactttgtaggagggggaggaaggaaacgaaaagagaactcctcaattcttttttagtgttttcg-aatgtaatg 52778903  T
Q  745 aaaatacttattaataatattaaacttttatcttttctacaata 788  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  52778902 aaaatacttattaataatattaaactattatcttttctacaata 52778859  T

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